RNA id: TCONS_00017783


Basic Information

Item Value
RNA id TCONS_00017783
length 3004
RNA type mRNA
GC content 0.47
exon number 14
gene id XLOC_009019
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 7384520 ~ 7598542 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCGATCCGCCTCTCCGCCTTCCCTCAAATCCCCTAGTCCTTCCCTTAAAGCCCCACACCGTCATTAAAAGAGCAAACATTAAAACACGAGCCCACAAAGCGACATCCTCCAGTCTCCGTAAGGACAGGACATAAAAACACCAGCTTGTGCTTTAAAACACACTGCAAAACCACAAACGCTGCACACTGCTGCCTATAAAAGCAGCACTCTCAACCTTCAATCGAGACAGTCGCTGCTCGATTGCTCTGGTCTGACGCAAACATGGCAGAATCGGAGAGTAACATTTCAGTTCCTCACTTGAAATCTCTTCTGCAAATGGATCCCTACCTCAAGCCCTTTGAAAAGGACTTCGAGAGGAGGTATGGGCTGTTTGAGAAGCAGCTGGCTTTCTTGGAGGAGGCTGAAGGAGGCTTTGATCATTTCACTCGCAGTTATGAGAGTTTTGGCGTTCAGCGGCTGCAGGACAACAGCCTGGTCTTTAAGGAATGGGCTCCGGCTGCAGAGGCTCTGTTCCTCACTGGAGACTTCAATGGCTGGGATAAGTTTTCCCATCCCTACGCTAAAAAGGAGTTTGGGAAATGGGAGCTTCACATTCCTCCGAAAGAGGACAAGACACCTGCCGTCACTCATAACTCCAAGCTGAAGGTGGTTGTTCACACCAGTGCGGGTGAGCGGCTGTACCGAATCTCTCCTTGGGCAAAGTATGTGACCAGGCATGAGAAGTCCGTCATCTATGATTGGGTGCACTGGGACCCTCCTCAACCTTACATTCACAAGCATCCCCGTCCACAGAAGCCCAGGAGCTTGCGGATATACGAGTCCCATGTTGGCATTGCTTCTCCAGAGGGCAAAATTGCGTCCTACAGCAACTTCACCCACAATGTGCTGCCCCGCATCAAAGATCTGGGTTATAACAGCATTCAGCTGATGGCCATCATGGAGCATGCCTACTATGCTAGCTTCGGTTACCAGGTCACGAGTTTTTTTGCAGCATCAAGCCGTTACGGGACCCCGGAGGAGCTGAAGGAGCTGATTGACGTGGCTCATTCTCTCGGCATCATCGTCCTGCTTGATGTGGTGCACAGCCACGCGTCCAAAAACACAGAGGACGGCCTGAACCTGTTTGACGGCTCCGACTCCTGCTTCTTCCACAGCGGGCCCCGTGGAGAACACAGCCTGTGGGACAGCAGACTCTTCAACTACTCCAGctgGGAGGTGTTGCGTTTTCTCCTGTCGAACTTGCGCTGGTGGATGGAGGAGTACAAGTTTGATGGATTCAGGTTCGACGGAGTCACATCCATGCTCTACCATCATCACGGCATCGGATCTGGATTTTCTGGGGATTATAACGAGTACTTTGGCCTGCAGGTGGATGAGGACTCTCTGGTCTACCTGATGTTGGCGAACCATATTTTACACACTCTCTATGAAGACTGCATCACTATCGCTGAGgaTGTGTCCGGGATGCCTACACTTTGCTGTCCAGTCCAACAAGGAGGTCTGGGTTTTGACTACCGCCTGGCCATGGCCATTCCAGACAAATGGATTCAAATCCTCAAGGAATTCAAGGACGAAGACTGGAACATGGGAAACATTGTGTTTACGATGACCAACAGGCGATATGGAGAGAAATGCATTGCTTACGCCGAGAGCCATGACCAGgcACTGGTGGGAGACAAAACGCTGGCCTTCTGGCTGATGGACAAAGAGATGTACACCAGCATGAGCGCTTTGATTCCCATGAACTCCATTATTGATCGGGGCATCCAGCTTCATAAGATGATCCGACTGCTTACCCACAGCCTGGGAGGAGAGGGATACCTCAACTTCATGGGCAATGAGTTTGGCCATCCAGAGTGGCTGGATTTTCCACGAATCGGCAATAATGAGAGTTATCATTATGCCCGCCGGCAGTATAACCTGGTGGACATGGATCATCTGCGCTACCGGCAGCTGTACGCTTTTGACCGAGACATGAACCGCACGGAGGACAACTACGGCTGGCTGGCTGCTCCACCGGCATACGTCAGTGTCAAGCATGAGGGTGACAAGGTGATCGTATTCGAGAGAGCAAACCTCATCTTCATCTTCAACTTCCACCCTTTCAACAGCTACAGCGACTACAGGGTGGCCGTGGGGCCGGCGGGGAAATATCCTTCACTAAACTCTGATTACAGGTCACAAGCTGAGTGTTTTTACTGGAAGCTACAGCTAGGATGAATGAATGTGTGGTGTGGAAACCAATGTTCACTCAGACATTTCACAGTCGAATAGAAATGGAAAGTAACAAGTGATTTATATATGATCTTTCAAaacagaagattttttttgtaaagtatagTTCTTGTTTTATGTATACATTTAAGATCTAAAGcttaaatatgtaatatgtatttaAGTCAGAATCActttcgtttatttatttttagctaattatcccaaCCACTCTCATATAATTTGTTCAGAGACCCCTCTTTTACGTGAGTCTAATCTGCTGTAATTTGtctaatgacccagtctgttgtgattggttgactgggttcagtgcgagacagagagaaatggccACCGTGGATATGAATAAGCAGAAAGTATGTGAAAGCCCAATGCAAGattgcaataaagcaatgcaggtaaacaccagcatattattCTACTCATAACCCTAACCCCGAGtaacaacacacattcagtattattcCACACAGTAGCAAATGTTGAACTATAGTGAAAATTGGCCGCGCTGCATGTGTGTATGAAGAGCTGATAGttgccatagcaaagacaaatggCAGAAGGCCACGAATTCAGTAAAGCATTTAAATTGGTAAATGAAGATGCATATGTCacgttttcaacatggttttagacgcaatatgtgaataaccccatacagatttaacctgacaGATGAATTACAAGCactgattaaaaatacataaggTTTATAGGTTTGTATGCGGAAAATTTaagtttgtgaggccgccacggacacccCCTTTG

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0043169 cation binding molecular_function
GO:0003824 catalytic activity molecular_function
GO:0003844 1,4-alpha-glucan branching enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110914-16 Predicted to enable 1,4-alpha-glucan branching enzyme activity. Predicted to be involved in glycogen biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in glycogen storage disease IV and pulmonary tuberculosis. Orthologous to human GBE1 (1,4-alpha-glucan branching enzyme 1).

Ensembl:

ensembl_id ENSDART00000173092

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019120 lncRNA downstream 344000 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00017779 lncRNA downstream 374591 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00017775 lncRNA downstream 432392 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00017758 lncRNA downstream 1507835 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00019121 lncRNA upstream 751487 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019122 lncRNA upstream 1001049 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00019123 lncRNA upstream 1590611 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00018812 lncRNA upstream 2848115 10446657 ~ 10448625 (-) False XLOC_009038
TCONS_00017821 lncRNA upstream 3157668 10756210 ~ 10759101 (-) True XLOC_009040
TCONS_00017780 mRNA downstream 71776 7299756 ~ 7337537 (-) False XLOC_009018
TCONS_00017781 mRNA downstream 72165 7314607 ~ 7337148 (-) True XLOC_009018
TCONS_00017776 mRNA downstream 432392 6968631 ~ 6976921 (-) False XLOC_009014
TCONS_00017777 mRNA downstream 432462 6969775 ~ 6976851 (-) True XLOC_009014
TCONS_00017771 mRNA downstream 443068 6948644 ~ 6966245 (-) False XLOC_009013
TCONS_00017784 mRNA upstream 572342 8170884 ~ 8191992 (-) False XLOC_009020
TCONS_00017785 mRNA upstream 572357 8170899 ~ 8177919 (-) False XLOC_009020
TCONS_00017786 mRNA upstream 588281 8186823 ~ 8191841 (-) False XLOC_009020
TCONS_00017787 mRNA upstream 590566 8189108 ~ 8191992 (-) True XLOC_009020
TCONS_00017788 mRNA upstream 636989 8235531 ~ 8309217 (-) False XLOC_009021
TCONS_00017778 other downstream 400375 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017773 other downstream 443068 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017772 other downstream 443074 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017769 other downstream 463222 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017797 other upstream 1240960 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017798 other upstream 1389101 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017810 other upstream 2003095 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017819 other upstream 2587512 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017830 other upstream 4377601 11976143 ~ 11976260 (-) True XLOC_009050

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000308_01300803_01359626.mRNA True 2182 mRNA 0.48 11 CI01000308 1300619 ~ 1360097 (-)