RNA id: TCONS_00017787


Basic Information

Item Value
RNA id TCONS_00017787
length 723
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_009020
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8170884 ~ 8191992 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTCAGACGCAAACGCAGTACGTGCTGTGCGTGCTATGACGCGCACTCTCGCTGCAGCACTGCACAGTCACATGACAGGCGTGTAGACATTATGGAGCCTTTTCTCTGTCAAACTTTAATCCGATTTAACTTTTAGACTGCAAAAGCGATGGACAAAGCTGGAATTTTGACGGCTTCTGATGTCCAGTGATATGTCAGCTAAAGCCCTGCGTCATGTCTGTGGATGGCCCCCGGACCTCTGTTTTCACCTTCCAGTCCGCTGTTCACAGCCATCATGTTCTGCGCTCGCTGGAGGAGCTCAGACAGAAAGAGCTCTTGTGTGATGTGACGGTTGAAGTGGAGCGCAGGAGCTTTCGAGCACACTCTTCTGTGCTGGCTTCCTGCAGCCACTATTTTTACACCAGACTGACAAACCACAGCCAAGCAAACCCCACTGTCAGCTTGCCGGATGAGtctatgcaggttctgttcactaaagtagacatcattggCATCCGCGTCTCAGGCCCGGTTCTAGCCAACCACAGAAGGGTGGGCTGACATAAATCCCAGGTGGGCAGTTTTTTCGGGGTGGGGTTAGGAGATGGATTAGcgtaaatattaatgtaataatgtttATGCTTTGAGTTGCATATTATATTAAGTCAAAAGAAGCACAAATATGGATTCAATGAAGGTTTATGTTAAATCCAGTCAACATTCAGAATGTCCACAAAgtcaag

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-7601 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in head. Orthologous to human BACH1 (BTB domain and CNC homolog 1).

Ensembl:

ensembl_id ENSDART00000190714

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019120 lncRNA downstream 1123795 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00017779 lncRNA downstream 1154386 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00017775 lncRNA downstream 1212187 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00017758 lncRNA downstream 2287630 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00019121 lncRNA upstream 158037 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019122 lncRNA upstream 407599 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00019123 lncRNA upstream 997161 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00018812 lncRNA upstream 2254665 10446657 ~ 10448625 (-) False XLOC_009038
TCONS_00017821 lncRNA upstream 2564218 10756210 ~ 10759101 (-) True XLOC_009040
TCONS_00017785 mRNA downstream 11189 8170899 ~ 8177919 (-) False XLOC_009020
TCONS_00017783 mRNA downstream 590566 7409313 ~ 7598542 (-) True XLOC_009019
TCONS_00017782 mRNA downstream 590814 7384520 ~ 7598294 (-) False XLOC_009019
TCONS_00017780 mRNA downstream 851571 7299756 ~ 7337537 (-) False XLOC_009018
TCONS_00017788 mRNA upstream 43539 8235531 ~ 8309217 (-) False XLOC_009021
TCONS_00017789 mRNA upstream 86007 8277999 ~ 8309207 (-) True XLOC_009021
TCONS_00017790 mRNA upstream 122940 8314932 ~ 8319988 (-) True XLOC_009022
TCONS_00017791 mRNA upstream 232719 8424711 ~ 8517555 (-) False XLOC_009024
TCONS_00017792 mRNA upstream 233682 8425674 ~ 8517376 (-) True XLOC_009024
TCONS_00017778 other downstream 1180170 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017773 other downstream 1222863 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017772 other downstream 1222869 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017769 other downstream 1243017 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017797 other upstream 647510 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017798 other upstream 795651 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017810 other upstream 1409645 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017819 other upstream 1994062 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017830 other upstream 3784151 11976143 ~ 11976260 (-) True XLOC_009050

Expression Profile

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