RNA id: TCONS_00017788


Basic Information

Item Value
RNA id TCONS_00017788
length 3287
RNA type mRNA
GC content 0.44
exon number 10
gene id XLOC_009021
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8235531 ~ 8309217 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacatacacactcacacactcactcgccGCTTTTAGGAGCTCGCAGGAGgacttttctctttctctttctcgtATCGGAGTGTCTGGCATTTGGGATTTACTCATGGAGTGAGTGACCGGGGCTGTTTAAAGCGCCTTTGTCTCGGACTTGTCTGCAGCTTTGATGTTCTTGCAGATGGGAGATCAGATTACAGGAATCAGACCGCAGGCTTTCATTTGAGGAGCTGTTCATCCAGCGCGGGACCCGGACAGACTCTGGATCTTCAACCCTTACTGAGCGCAGATCACCGGAGACCGACACACCGTGTCAGAATGCCGCAGGCTCAGATCCTCTCCAGGTTTCCTCTTCAGAGGATACTCATCCTTCCACTGTGTGTTCTGTTTGCAGTGATGGCAGAGGAGAGAAGAGACTGCAGGGAACAGGAATACAAGGATAAGTTTGGGAGCTGTATTCCCTGCCGGCAGTGCGACGCTGGACAAGAGCTCTCCAAGGAATGTGGCTTTGGCTATGGGGAGGATGCCCAGTGTGTGCCCTGCAGAGCCAGTCGCTTCAAAGAGGACCGCAGCCTGCAGAAATGCAAGCCCTGTCTGGACTGCTCGCTGCTCAACCGCTTCCAGAAGGGGAACTGCTCCACTACAAACAACGCCGTGTGTGGAGACTGTCTGCCCGGGTTTTACAGAAAGACAAAGTTACGTGGATTTCAGGATATGGAGTGTATCCCGTGTGGAGATCCACCACCACCATATGAAACTCACTgtATGGGCCGGGTGAATCTGGTGCCTCTGCCGTCGACAGTGAGCAGTCCTCGAGACATGGCTCTGGCCGCTGTGATCTGCAGTGCTCTGGCCACTGTCCTCCTGGCGCTCTTCATCCTCTGTGTGATCTACTGTAAGAGACAGCTGCTGGAGAAGAAACCAGTATCCATGAGGGCTCATGAGGGCCCGTTCCTGGGCTCGGAGTTGTCTTGTTTGGACCGGAGAGTGCTGGAGTTGTCCCAGAGACCCTGCTGTCACTGCACTCATGGATCAGAGCAGACGTGTGGTGGCGTTCAGCTGGTGTCGTCTGTGTGTTGTGAGGATGTCTGGAGTCAAAACAGAAGACGAGATGCTCCAGCCTTTCACTCACACTGCAGAATCTCTGACAATGGCAGGCTGACGAACGAGTCGGTGGGCAGTCAGACTGATATGGCCTGTGCTCCTGATGAAGTCTGGCCGCTCGTTCAGTCCAGAAGAACCACAGACAGTCTCCAGACCAACCAGAGGTGCTCCTCATGTGAAGAGGATGAGGAAGAAGTGCAGATCTCAGATCAGCGAACTGCAGAGGAGCCTGAGGATGCCTCACACAAACCACTAATACAGCAGACCACTGACACTGAAGGATGAGCTGCTTTAATCTCAGCGCCTGTTGTTCTCGGAGAGCCTTTCTGACGGTGGAAGAAGCAAAAGGAAGATCCAACCTCAGATTAAAGCAGGCCACACACACTGAAGACAACGGCTGACGAAAGACACTTTATTAACGTCTAAACAAAACCACACTCCACGTTTAGCACTGACTGCTTATGCAGTCAACCTGAATGGATTCTGCTATAGATCAAACTGCGCCTAtatatgtatctgtgtgtgtggtcagttgTAAAAGACTGGGTTTTCATCTAATGATTCAAActttgtttttcaaaattgtgaGCTTACAGTTGCAGTtctgactttttcttttttcttataaaggctcgtacacactgGGAAGCTTTCGCTCATGTTTATCGTCAACGTTTTTCTGGATTGAAAGCCAGGTGATTTTCATTGCTGTTAAGCAGAGTGAACAGGCATAATCACCCCCTGACATTAGATGGCAGTGAAACAGTccatctgtgtcgttataatggcgtcgacaaacttgtgACTCTTTTTGTTCCGACACAATGCAAATAGCAGCTCCACATTCATCTTGCCTCGGTGCATCATCGTCTACATTGAATGAAAGTGAAGCTGGAATCGTTTCCGTTTTGTGCTTGAGCACCTCCAAGTGGTGTTCCAAGTGGCATGTAAACAAAGGTGCCAATTGTTTTAGACGTGGccgtcaaaacaaacaaacatgaggtatttttttattaaaaatgacgATTTTATGCCTGGCCTTTTGCACATTGGTACACACGTTCACATTTGCTCCCTTTGTTTAGTCATGCAGTGTTAAACCAAAAATGCATCGCAATTTGAACGGACCTTAAtgataaatgatttaatttacttagaattattagccccccccttgacatttttttattttttattatatttcccaaatggtgtttaacagagcaagaaaaatttcacagtatgtctgataatattttctcttctggagaaagtcttatttgttttattttggctagaataagagcatatttaaatttttttataaaccatttttaggtaaaaaattattagccccttatataaagctatattttttcgatagtctacagaacaaaccatcgttatacatcaacttgcctaattaccctaacctggggTGCGtgtcccaaaaccatcgttagccaactaaggttgcaagttctgtTATTACACGCATAGTTTATTGATTAACCGTTTCCCAAATAcgtcgctccaacgaacattcgcaaagtgcgtcgcaaacttgagcactcgcaactacacctctggagctgtagttagaaacatagttactgaatgtgttctattcccacttatcccccctatacCCTATTCATTTTGAACATTcaaacattcaaagttggaattttaaattaaaaaagcattaaggtcatctctcttaggtgtaatttgcttccaAACTATTTGGGGGGTTAATATTttagggggcctaataattcggacttaaactgtatatgcaaatttaaatgacagaaaacaaTTCTAACAATAGTCAGAATAGTTAGGTGTAAACCTAAATTTGAAGAATAAACATTAGAATTGCTCAAAATAAAGTCTGAATTGTGCTAAATAGTTGGATTGGGATGAAAACCTAAACAATTTCAGTTGTTAGAAATAAAAGTTGCAATTATgaaataaaagaagaagaaacgAAATGAGCAGATTTGAGAAATCAAGTTGTGTGTATGTTCACCAGCCTGTTGAATTGTAGATATTGTATCATAGGAAATAGAAGgacaatatttttataatgtagatACTCATCCTGTGCCTTCAGTCTCGCTGTATGGTCTTTTCTTATAGAAATCGACTCATCAAATGTTTTCAATAAAGTTTTACAAACCTTA

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0014045 establishment of endothelial blood-brain barrier biological_process
GO:0048916 posterior lateral line development biological_process
GO:0048922 posterior lateral line neuromast deposition biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0005515 protein binding molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04050 Cytokine receptors

ZFIN:

id description
ZDB-GENE-030131-6760 Predicted to enable signaling receptor activity. Acts upstream of or within establishment of endothelial blood-brain barrier; posterior lateral line neuromast deposition; and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in otic vesicle; posterior lateral line primordium; and tectal ventricle. Orthologous to human TNFRSF19 (TNF receptor superfamily member 19).

Ensembl:

ensembl_id ENSDART00000061351

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019120 lncRNA downstream 1170218 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00017779 lncRNA downstream 1200809 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00017775 lncRNA downstream 1258610 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00017758 lncRNA downstream 2334053 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00019121 lncRNA upstream 40812 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019122 lncRNA upstream 290374 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00019123 lncRNA upstream 879936 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00018812 lncRNA upstream 2137440 10446657 ~ 10448625 (-) False XLOC_009038
TCONS_00017821 lncRNA upstream 2446993 10756210 ~ 10759101 (-) True XLOC_009040
TCONS_00017784 mRNA downstream 43539 8170884 ~ 8191992 (-) False XLOC_009020
TCONS_00017787 mRNA downstream 43539 8189108 ~ 8191992 (-) True XLOC_009020
TCONS_00017786 mRNA downstream 43690 8186823 ~ 8191841 (-) False XLOC_009020
TCONS_00017785 mRNA downstream 57612 8170899 ~ 8177919 (-) False XLOC_009020
TCONS_00017783 mRNA downstream 636989 7409313 ~ 7598542 (-) True XLOC_009019
TCONS_00017790 mRNA upstream 5715 8314932 ~ 8319988 (-) True XLOC_009022
TCONS_00017791 mRNA upstream 115494 8424711 ~ 8517555 (-) False XLOC_009024
TCONS_00017792 mRNA upstream 116457 8425674 ~ 8517376 (-) True XLOC_009024
TCONS_00017793 mRNA upstream 295260 8604477 ~ 8665662 (-) False XLOC_009026
TCONS_00017794 mRNA upstream 295312 8604529 ~ 8763106 (-) True XLOC_009026
TCONS_00017778 other downstream 1226593 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017773 other downstream 1269286 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017772 other downstream 1269292 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017769 other downstream 1289440 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017797 other upstream 530285 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017798 other upstream 678426 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017810 other upstream 1292420 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017819 other upstream 1876837 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017830 other upstream 3666926 11976143 ~ 11976260 (-) True XLOC_009050

Expression Profile

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