RNA id: TCONS_00019122


Basic Information

Item Value
RNA id TCONS_00019122
length 846
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_009025
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8599591 ~ 8602094 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGATGAATGACAACGCGACGTATGTTAAGAATTTTTGTCATTAGAGACACGTTTTACTcattattgagtttttttaaaaGGGTAAATGCAAAATATATTGCTAATTAATTTTAGACAACCTACTGAACCTCGCGTGAGGACCCCGATATGCTTATCGTTATATAAGCTACAAAAAGTCGTCGTCGTTTGTTGAATCCTTTGTCTCTGTATATCAGTAGTCTCGTCTCAACTTTCAGGAAAGTTTTGGAGTCTGAAGTAAATCTGAATGTCCGGTTGGTCTGATAAACAGGCGAGGCACGTACCGCTGCTCATCCGTGTCTTTCCGAGGCTTGAATTCAGATGCGTCCGTCCGACTCCAAACGATTCATACCGCCACAGGTGGAGCAGCTCTTATCAATATCAATACATCCCAAATCCAGCTCAGCTACACAGCATATCTGAAGGGGAAACTGTAAGCCTCTGAGTCAAAAATACCGTTACAAAGAGGCATAattgaatcatttttttaatcCTCAGATGGTGaacaGGATATGCCGGATTCCTTCAGCGCATGTTTGTCCTTAGACTAGACATCGATTGTCCGGGTCACGGTGGGTGTTTCGATTCTGATACCTCGATTGATGGCAGTGCTGGGAGTAAGGATGCTGTTATTGATCATCTAATGGTCAAACTGATGAatgctgctgtaaatgctgctgcCACTATCAGCCGAAAACACTCAAATACACCAAACACCTGGAGTACTTTCACTCTTTTCCCCAACCAACACATATACAGCTGAAGGAGAAATAAACAGATCACTTGTAAAGCATCTCTTTTTTTGATTTATGATTTTCTTAAAtgag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019121 lncRNA downstream 204990 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019120 lncRNA downstream 1534278 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00017779 lncRNA downstream 1564869 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00017775 lncRNA downstream 1622670 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00017758 lncRNA downstream 2698113 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00019123 lncRNA upstream 587059 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00018812 lncRNA upstream 1844563 10446657 ~ 10448625 (-) False XLOC_009038
TCONS_00017821 lncRNA upstream 2154116 10756210 ~ 10759101 (-) True XLOC_009040
TCONS_00017822 lncRNA upstream 2371623 10973717 ~ 10985904 (-) False XLOC_009041
TCONS_00018813 lncRNA upstream 2382171 10984265 ~ 10985904 (-) False XLOC_009041
TCONS_00017791 mRNA downstream 82036 8424711 ~ 8517555 (-) False XLOC_009024
TCONS_00017792 mRNA downstream 82215 8425674 ~ 8517376 (-) True XLOC_009024
TCONS_00017790 mRNA downstream 279603 8314932 ~ 8319988 (-) True XLOC_009022
TCONS_00017788 mRNA downstream 290374 8235531 ~ 8309217 (-) False XLOC_009021
TCONS_00017789 mRNA downstream 290384 8277999 ~ 8309207 (-) True XLOC_009021
TCONS_00017793 mRNA upstream 2383 8604477 ~ 8665662 (-) False XLOC_009026
TCONS_00017794 mRNA upstream 2435 8604529 ~ 8763106 (-) True XLOC_009026
TCONS_00017795 mRNA upstream 211661 8813755 ~ 8856391 (-) False XLOC_009027
TCONS_00017796 mRNA upstream 211737 8813831 ~ 8856785 (-) False XLOC_009027
TCONS_00017799 mRNA upstream 388483 8990577 ~ 9002155 (-) True XLOC_009029
TCONS_00017778 other downstream 1590653 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017773 other downstream 1633346 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017772 other downstream 1633352 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017769 other downstream 1653500 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017797 other upstream 237408 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017798 other upstream 385549 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017810 other upstream 999543 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017819 other upstream 1583960 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017830 other upstream 3374049 11976143 ~ 11976260 (-) True XLOC_009050

Expression Profile

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