RNA id: TCONS_00017799


Basic Information

Item Value
RNA id TCONS_00017799
length 4077
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_009029
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8990577 ~ 9002155 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTAGAGCAAGAGAACTTTCTAGTTGTCCGTGGAGACCTTCTTGAGTGTTTGGGATTTATTGACTGTTTACACGTCTTGCAGCCAAGCAAGCGTATTCACGCAGCGCTCGTAGGGGCCAGTTCTTTATAAAGTgctgtttttaatgtgttttccTCGGGTCACTCCATCGGGAGTGCGCGAGCCACCTGCGGTCCGGTCATGGATTACAGTAACCTGATGGCGCCTCCGGTTCCCCCGCACATGCCCCAGTCTCCGTCAGCCGCGCACTGCCAGGGCCGCCTGCTTAAGTGCGTGTTTCTCGGGGACGGGGCTGTGGGAAAAACCAGCCTCATTGTAAGCTACACAACCAATGGATATCCAACAAAATATGTCCCGACAGCGTTTGACGACTTCTCAGCGGTCGTACAGGTGGACGGTCAGCCagtgagactgcagctctgtgaCACTGCAGGACAGGATGAGTTCGATAAGTTGCGCCACTTCTGCTACACGCGGACTGACGTTCTCCTGCTGTGCTTTAGTGTGGTGAGCCCCGCTTCCTTCCAGAACATTGGTGAAAAGTGGGTTCCGGAGATACGACGGCGTTGCCCGCTCACCCCTGTGATACTAGTGGGCACCCAGTGTGACCTTCGGCAGGACGTCAAGGTTCTTATTGACCTTGCAAGACGCAGAGAAAGACCTGTTCTGGAAGAGGACGCCCGAGCCTTGGCCGACAAAATAGGAGCAGTGTCCTACATCGAGTGTTCTTCGCTCACACAGAAAAACCTGAAGGAGGTGTTTGACGCCGCCATATCTGTAGGGCTCCGACATTCAGACAGAAGAGCAAGACGGGAACGGAAGGTTCACAGTACTGCTGATAAAATGAAAATGCTCTCAAAGTCATGGTGGAAGAAGTATATCTGCATACAGTAGCCGAGGTCTTCTGAGGTGATGAACAATGTGATGGACTCTTGCTCAGCATCACGCTCCTCAGGTGGATGATGCTCAGTTGATCATGAATTGGCAACAGAAAGTGTGCTGGTAAATTACCTTTCATGGGATAAAGATTTTCAGCCCCTAAGGCATGGAGTAGGCGAAGAGGACTGTGTTGCCTGTGTTTTCAATGTTGGGATTAGGGTTGCAAAATTCCAAATTGTCAAATCTGGAAACTTACCATGGGAACTATTGGAAATATATGGAAATTACAGGGAATAAACTGGGAATTTACAAAAATCCAGATTATCTTATAATATGTagctgtatatatttaaaatatattcatcaATCACATACCCTCACGGGAGAGGGGGATTCTTACATccactttaaaattaaaacaaatttctgCAATTAAGTGTAAACATTACAAACATTCAAGTAGGTTTTGACATTACTTGGGTAAATAATAGTGTTATAACACAACTAATACTACAACCCTGCCGGCACAGGACGTCgacatgatgtcatattgatgttgtaccccaacgtcatggggacattggatttcctttggaaatgaaaatcgggttgaacTCAGAATCCAACATCAGgttgacatcaatgtccaacatccaacctaaaatcaatcaaaaaccaaacaaatatCATCGTCTACTCCTGTTACACCTTGAGGTTGTGTGGACtttaccaatatgacatctatcagatgttggattttggtcaacaaatcttaaaatcaactaaatatcaacataatttgacgCTGTTATTGGACgttaaaataacgttgtccttagaagTTATcttgacattgaattttggtcacctgacgttaTGGCCTAAATCGAACCTaaaattaacgtcttatgatgttgtgtgcctgctgggaaagtAGTGCTAATTGTAAAAAAAGCACCCTTTTCTTTATATTAACCCAAGCTAGTGCTTCTGTCTTCCCCTTGCCAGTTTTCATACATCTGCACGGTATACAttactatttttaatgtttataatcttcaaggctgaatttatttgatcaaagATACAGAACTGAACATATTACTAGCCTATGACCAAACAATTTAGCTTCATATGTGATGCAGTTTACATTCCGCACATTTCAAATTCCTGTAAATTCCCTAAAATTCCCGGTAAGTTTCCAAATTGGAAAGTTTCCAAAATGTTGCAGATGAATTTACTATGAAAACCTTCTGGAACTTTGCAACCTTTGTTAAGAAGCCATTGTTTATGCTACTGTTTCTGGAAATCAGTCACTGGTTCCACCCTTTTAATGACATCATGCATGTCATTAAATGCAGCAAGTGTTTATCGGTTTGACGGTCAATTGACAGAACTTTAACAACAGATCGCACTCAAAGTGAGCGTTGGTATCACGCCAAAAACATACGGACACCACATAACATGCCAAACGTCAGACAACAGCTGGTCTCTTACCTCTACCGATTCAAATTTAGATGTTTTTGCGTCAATCGTGATTGGCAGAGATAATATGCATCATCACAAGGTGATTATGATTGGCAGTCCTGCCAGCCAATAGTGCTCCATACATATGCGGTACCTAAATGTGAAAGTGACAGGTCAtgtaaaaagagagagaaagagttagAAACAACttacacacacaatatacagtGTACGGTTCACAAATTTTCATATTCAAAATTgcataatatttacaatattatgtaGTCTAAACTTGGCATTAAAGTCGAATTTTGAAATTGATTCATACTGGCTACATTTCTGAATgggaaataataaatgtaaaggaGTGTGATTGGAAGACTGGACTTCAATGCATATCATCTCAGAGGCTTTAGCTACTTAGAAATGTCTGAGCcagatttgttttgtcttttaaaatGATCCCCAGATCTCCAAATTTTTTCTTGATTTTGCTCCAAATAACTCGTCAGTTGTGTTTTATCTGCACTCTGAGGCAAAATAGAGCTATAGCGGTTTCCCTGGTCGCAGTAAAATTTAATGGTTTGCATCAGTTTGCCAGAAGGACACAGTTTTGTTCATTGAACACATGGAAACTCTATTAATTGCTAGCCTaatgttcatatttctgctgaCACTCAAAATGGCTGAACTGGAACACTGCTGACCTCCTCCACAATCAACACCATATGATTATGGTTTCAAAAACCATCTACTGTTTTCATTTAATAACCAAATACAGTGCCACACTTTCTAATTTATGTCTTCCACCTGATAAATGCATGTGCAAATGTTATGTGACTATGTTAATGATGCTAGCATGCTAACACTGGTGATTTAAgcgctttttttttgtttgtttaccctCCATTTCTGCAGTTTTATAGCAGTCACATGGGCACTCCAAGTGGAACATATATGCCATGATGTTTAAGTTGTCACTCAGCAATCATTTGATCATTTTGATTGTCCATAAAGGGTGTAATTACCCTTGTATCCTGGTAAACACAGTTCCGCGATGTGAAATGTAGGTTTGGGGAACAGTAGAGCTACAGTATGATTAGCTTTATACGCTGCAGTGCACTAGACTTGATCTATACAGACGTGCCATGTTGTAAAAAGTCTAGTACAAAGTTCTTTGGTTATGTATCCTCCTGTTTAACCAGCAGTGATGGGGAGGATCGGCCAATGAGCTGTTGAATTTGCTTCTCATTATTCAGAAGCCCAATCAGAATCAATCTGCCAGAGATCGGAGCGCAACAGTGAAGTGACTGCattgtattttctgttttaaaacattaatctGATCAATTTTATATTGTCATGTTGGCAACAGCATttcaatgtgtttatttttaaagtctttttaatTAATCTGCAGAACTGAGAAAATTAAATGAGGAAGATGTTTCCTCCTAGGCCAAAAACCGAGAGGTCGTTCACTGTTGCACTCTTTACAGCTACACATCATCAGGAAATGGCCTCTGACCTTTATGTTTAACTGTCAGCGTGATAACTTTATCAGGGTAATCTACTTTTAGATTTGTACATTTTATGATTGCATTTAAATTTCTCTTACTCTATAAATGCTCCTGATTTGGTACcgtatgtgtgagagtgtgtaacTGCTATCCATGATTTTCATGGAAAATAAATGTGACATTAACTGAAA

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0016477 cell migration biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0032488 Cdc42 protein signal transduction biological_process
GO:0030031 cell projection assembly biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-308 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including Cdc42 protein signal transduction; cell projection assembly; and endocytosis. Predicted to act upstream of or within small GTPase mediated signal transduction. Is expressed in several structures, including immature eye; nervous system; neural rod; otic vesicle; and paraxial mesoderm. Orthologous to human RHOU (ras homolog family member U).

Ensembl:

ensembl_id ENSDART00000126708

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019122 lncRNA downstream 388483 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00019121 lncRNA downstream 595976 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019120 lncRNA downstream 1925264 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00017779 lncRNA downstream 1955855 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00017775 lncRNA downstream 2013656 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00019123 lncRNA upstream 186998 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00018812 lncRNA upstream 1444502 10446657 ~ 10448625 (-) False XLOC_009038
TCONS_00017821 lncRNA upstream 1754055 10756210 ~ 10759101 (-) True XLOC_009040
TCONS_00017822 lncRNA upstream 1971562 10973717 ~ 10985904 (-) False XLOC_009041
TCONS_00018813 lncRNA upstream 1982110 10984265 ~ 10985904 (-) False XLOC_009041
TCONS_00017796 mRNA downstream 133792 8813831 ~ 8856785 (-) False XLOC_009027
TCONS_00017795 mRNA downstream 134186 8813755 ~ 8856391 (-) False XLOC_009027
TCONS_00017794 mRNA downstream 227471 8604529 ~ 8763106 (-) True XLOC_009026
TCONS_00017793 mRNA downstream 324915 8604477 ~ 8665662 (-) False XLOC_009026
TCONS_00017791 mRNA downstream 473022 8424711 ~ 8517555 (-) False XLOC_009024
TCONS_00017800 mRNA upstream 8736 9010891 ~ 9031996 (-) True XLOC_009030
TCONS_00017801 mRNA upstream 231897 9234052 ~ 9272328 (-) False XLOC_009032
TCONS_00017802 mRNA upstream 233454 9235609 ~ 9257136 (-) True XLOC_009032
TCONS_00017803 mRNA upstream 276837 9278992 ~ 9294929 (-) True XLOC_009033
TCONS_00017804 mRNA upstream 313022 9315177 ~ 9321970 (-) False XLOC_009034
TCONS_00017798 other downstream 2818 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 134198 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017778 other downstream 1981639 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017773 other downstream 2024332 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017772 other downstream 2024338 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017810 other upstream 599482 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017819 other upstream 1183899 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017830 other upstream 2973988 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017854 other upstream 4822317 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 5074384 14076539 ~ 14083113 (-) False XLOC_009064

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000154_00902311_00907798.mRNA True 1273 mRNA 0.52 4 CI01000154 902054 ~ 907995 (+)