RNA id: TCONS_00017805


Basic Information

Item Value
RNA id TCONS_00017805
length 671
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_009034
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9315177 ~ 9321970 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGATGGCGATCTTCAGTGTGTATGTTGTCAATAAAGCTGGTGGACTTATTTACCAGTACGATAATTATGTACCTCGAGCTGAAGTGGAAAAAACATTTAGCTTTCCGCTCGATTTAGTGTTAAAGATTCACGATGAGAAGGTTGTCGTGTCATTCGGACAGCGGGACGGAATCAGAGTGGGTCATGCGGTTCTGTCCATTAATGGGGTAGACGTGAATGGTAAATTCACTGCGGAAGGGAAGGAGATTCAGGAGTATCTGAGAGATCCTGCAAACTATCCAGTGTCCATCAGATTCGGCAGACAGAGACTCTCTTCAAACGAGAAGCTCATGCTGGCCTCAATGTTTCACTCATGTGAACTATTTGACCAAAACCTAAAGAGTGCCCTGGAAATAGCAGAGAAAGCAGGGACGTTTGGACCAGGGTCCTGAATTGAACTGTCCAGAAGTACAGCCAAAGTATTTCCATCAACTTTTTAaggaaaacaaacaagactttttcaCAAGCTCAAATAATTTAACCCTGGACTATTATACACTGTTCCTCAAATTAAGTCTAAAATTTACAGCGAGAACTGTTTCACattaattttgtaaataatgtacATGGATGCAGTTTGTTTGCAATATTCATGCAGAACCTCGAAAGAAAATGGTGCAGCTCAACAAA

Function

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0030008 TRAPP complex cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-1734 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPP complex. Orthologous to human TRAPPC4 (trafficking protein particle complex subunit 4).

Ensembl:

ensembl_id ENSDART00000159676

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019123 lncRNA downstream 124693 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00019122 lncRNA downstream 713876 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00019121 lncRNA downstream 921369 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019120 lncRNA downstream 2250657 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00017779 lncRNA downstream 2281248 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00018812 lncRNA upstream 1124736 10446657 ~ 10448625 (-) False XLOC_009038
TCONS_00017821 lncRNA upstream 1434289 10756210 ~ 10759101 (-) True XLOC_009040
TCONS_00017822 lncRNA upstream 1651796 10973717 ~ 10985904 (-) False XLOC_009041
TCONS_00018813 lncRNA upstream 1662344 10984265 ~ 10985904 (-) False XLOC_009041
TCONS_00018814 lncRNA upstream 1662344 10984265 ~ 10986106 (-) True XLOC_009041
TCONS_00017803 mRNA downstream 21041 9278992 ~ 9294929 (-) True XLOC_009033
TCONS_00017801 mRNA downstream 43642 9234052 ~ 9272328 (-) False XLOC_009032
TCONS_00017802 mRNA downstream 58834 9235609 ~ 9257136 (-) True XLOC_009032
TCONS_00017800 mRNA downstream 283974 9010891 ~ 9031996 (-) True XLOC_009030
TCONS_00017799 mRNA downstream 313815 8990577 ~ 9002155 (-) True XLOC_009029
TCONS_00017806 mRNA upstream 45180 9367101 ~ 9419472 (-) False XLOC_009035
TCONS_00017808 mRNA upstream 49067 9370988 ~ 9421481 (-) False XLOC_009035
TCONS_00017807 mRNA upstream 49067 9370988 ~ 9421481 (-) True XLOC_009035
TCONS_00017809 mRNA upstream 123061 9444982 ~ 9593532 (-) True XLOC_009036
TCONS_00017811 mRNA upstream 279722 9601643 ~ 9631592 (-) True XLOC_009037
TCONS_00017798 other downstream 328211 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 459591 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017778 other downstream 2307032 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017773 other downstream 2349725 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017772 other downstream 2349731 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017810 other upstream 279716 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017819 other upstream 864133 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017830 other upstream 2654222 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017854 other upstream 4502551 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 4754618 14076539 ~ 14083113 (-) False XLOC_009064

Expression Profile

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