RNA id: TCONS_00017809


Basic Information

Item Value
RNA id TCONS_00017809
length 3677
RNA type mRNA
GC content 0.48
exon number 10
gene id XLOC_009036
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9444982 ~ 9593532 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttttaatgaaaaatgttaCTTTCGTACCCGCTTTCCCCTAATTAGCCTGTGTGTTACATTATTAGGCCTATTTTACATAGGCTAATATTTTTTCGTAATGAAAACTACTATTTGTAAATAATCAACCAGCACTGACAGCAAAATTGTGCATTACATACACCAGTCCACAAGGTGACGTGTTTCTCAAACTAATCAACAGATTGGGCGAAGTTACCGACGGCTGTTTCTAATCCCGAGAACACGTTCAGTGCGCTCTGTTGCGGCTCATTTGACAACACCGAGTTATTCCGTCCACGAAAGTACATTTGAACGTCTCAGACACCCTTACAAACTTTACACAAACCCACCAAAAGAGGGTGTAATGTAATAAAGACACCAACTACACATAAAACAGCCGGTGTGGCGAACTCCACACTTGCGCTTCATTGTCTCCGTTCATCCCTACAGCAAAGAGAAAGAGTCCCGTCCCTTGAACACAGTGGGCGTGGTGTATGTGCGAGTGAGTGGGAAAACAAACAGCAGACAACCAACACTTCCTACATCTTCAGCAACTCGAGCGTTCGTGCCCGCAGTGTTTACACAGAGACCCGCAGCGCGCACAGGACGCGTCCCATCACCAGTAAATGAAGCTCCGCATCCACGGCACTGCCCCGCGCGCGCTCAACATACATGGACCCGCAGCATCTGAGGACTTCAGACTGATCTGCTGCTGTTGATTGTGTTTTTTGCTTTCTGTAAAATGAGCGGAGGAGAAATCATCTGTCAGGGATGGTTGAGAAAGTCGCCGCCCGAGAAGAAGCTGCGGAGATATGCATGGAAGAAGCGATGGTTTATCCTGCGCAGCGGCCGCATGAGCGGAGACCCGGATGTGTTGGAGTATTACAAGAGCGATCATGCCAAAAAGCCCATCCGCATCATTGACCTGCACTGCTGCGAGCAGGTGGACGCAGGCCTCACCTTCAAGCGCAAGGAGTTTCAGGACAGCTTTGTCTTTGACATCAAGACAGCAGAGAGGACCTTCTACCTGGTTGCTGAAACTGAGGAGGAGATGAACCGCTGGGTTCGCTCCATCTGCCAGCTGTGCGGATTCAACCAGTCGGAGGAGAACCATCACGATGAGCGATCATCCAGCATTTCCCGCTCCTTGACTAATGAGCTGAGCAGCTCTCTGGCTCCACTGATTGGTGAACGCAAAACGTCTGTGCCTGCCCACTCCAGTCAGCCAATGCTGTTCACCTTCGACATACCTGTACGCCATTCCCATGGTCCCCTGTCTAACAGCGCTCCGCAGGACTACCTCTTCCTCCATCAATGCATGAGCCGCAAGAGTGAGAGTGCACGGAGTGCCAGTTTCTCGCAGGCCTCACGCAGCAGTCTTCTGGTGGGAAGTGACTCGGCGGTTCAGAGACTCACTCATGGTTTCTCCCACTGTTTAAATGGCATGGGTGCCCAGCTTCACGGCTTTTACAGCCTCCCCAAACCCGGCAAGCATCAGCAGCCCCCCTCGCGGACCGACTCACAGGAAGCCTGCTACGTTCTGCCCAGGAACTACAGCTCTGAAGGGGCATCTGAGCTTGATTCGGAAGACGTGTACACCTTTAAGACCCCCAATAACACTCTAGCGGCGCCCCAAACCAATGAGCAACGAGCTCTCGATAACTATGATTTACCAATTTACCAGATCCCCCGCACGTTTGACAAGAACCACAACGCCCTGATGCCGTCCAATGCTGACTCCACAAGCGTGCCTCCTCCAAGACCTCCAAAACCAAGCCAGGGCTCGGAGTCACGGTGGGGTGGCACGCTGCCCACGGGGGCTCAGAACGGAGAGGTGTCCACAGCGTCCGTCATACCCAGGAGAAACACCCTGCCAGCAGTGGAGAACATCAAACTTCATAGAGGATCCTCGTTTGAAACCAGCAGTCACCAGAGGCCAGTCTATTTTAACAACTCTGGTCAGTCGGTGGAGTCTGTATACGATGGATTCAGTTCTTACCTGAGAACTAAAGCCCCATTGACCCGCTCTGATAGTGCCGGCTCTGATGATAACTATGTACCCATGAATCCCGGCTCGTCCTCCTCCCCTCTCAGTGCTGCCCTGGCTGACAGTCCCAAAAATAACTATATTCCCATGAGCCCAGGTCCTCACCATTTTGATTTCCCAGGTTTCTCGGCAACATTACCGGCCAGGAAGGGTAGTACAGCATCATTGTGTCTCCGACCGGGGCGTCTCAGCGACGTCACACCACCACCAATCAACCGCAACCTGAAACCAAGGACAGCAAAACCAACACCTCTCGATTTGAGGAACAATGGCATCATTGATGAGCTTCCTTTCAAGAGTCCTATTACCATGTCTTGGACAAGGCCAATGCCTATGAACTCCATCTCGTCACAGCACTGTCGACCCATCTCAACCCAGAGCATCACCAGCACTGATTCTGCAGACAGTGAGGAGAACTATGTGGCAATGcaaAACCCAGTCTCTACCTCCCCAGCGATGAGTGGTACCAGCAGTCCTGCACCGAGGAATTGTGGTAATGTGGACTATCTGGCTCTGGACTTTCAGCCTGGTTCTCCTGGTCCACACAGAAAGCCGTCCACCTCTTCAGTCACCTCAGATGAAAAAGTGGACTATGTGCAAGTGGACAAAGAGAAGACGCAGGCCCTCCAGAACACCATGCAGGAGTGGACAGATGTGCGACAGTCAAGCGAACCGGCTAAAGGCATCAAGTCCTGATGACGTTCAACTGTCTACATTAAATGTGTTCCTTACTGTCAGTCCAAATGCTCTTATACAGTTACACGCTGATAGAAACTGGGACAAAATAGCGAATGATGCAGCAACTAAAGCCATGAATCCAACTAACTCCTTTAAAGGACTAAAATCCCTCAGCCTCCTGGACTGTGATGCTATGCATGTTAGAGACATGTTTAACTTCAAAGTTCAGTGCGACAAAATTTTAGCTACTTGCTCTTTCTGAGAGTGAGCGACTTCTTCTGTGGTATGTTGAAAATCATAATCTAGTTAATAGTAATGTGTGcaatttttttatgtgaaataCTTTCTTCAGCTTAAAAGTCAAAGAGAACCAAGTAAGCCATTTGATCCTCCCTGAAAACTGTAAACACTGTGACTGTTTGAAAACATTGCTCTGTTTGTTTGAGCATCCCGGCTAGCCTGGCATGGCAACACAGCTCAGCCAATGGCATGAGTTTGGGGGGGACTATTTAACCAATGACGTACAAGAAGAGCATTCAGGAAACCTGTTTGACACTCAGTACTGTTACAAATCTATTTGGTGGCACTAGTTAGGCAGATATGCCACTTTAACAGTGTTATAAGGGCAGAATAGCACATCATGCAAATGCTTTTCTGAAGTAACTATGGTCTGCCTACCAACTTGAATCGCAATTTATTAGGAGAGATGGTCGTTTTTCAATAACAACTAAGCAATGCAGGAATGcttgtaaaaaaaattcttatagGTGTTGAGTTAATAACTTCAGACATTGGGTCACAATCATTAAACATGCATACGTACAGATTTTTGCAAAACGTGCACAGCAGTgagaaaaaatctaattcattcaTTGGAAGATTATCATCAACACTAACATAGTGCATTgcgccaaagtccctttaaggcagggatgtcaaactcaattactGGA

Function

GO: NA

KEGG:

id description
ko04014 Ras signaling pathway
ko04072 Phospholipase D signaling pathway
ko04071 Sphingolipid signaling pathway
ko04664 Fc epsilon RI signaling pathway
ko04666 Fc gamma R-mediated phagocytosis
ko04380 Osteoclast differentiation
ko05220 Chronic myeloid leukemia
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-130530-756 Orthologous to several human genes including GAB2 (GRB2 associated binding protein 2).

Ensembl:

ensembl_id ENSDART00000169912

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019123 lncRNA downstream 253705 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00019122 lncRNA downstream 842888 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00019121 lncRNA downstream 1050381 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019120 lncRNA downstream 2379669 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00017779 lncRNA downstream 2410260 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00018812 lncRNA upstream 853125 10446657 ~ 10448625 (-) False XLOC_009038
TCONS_00017821 lncRNA upstream 1162678 10756210 ~ 10759101 (-) True XLOC_009040
TCONS_00017822 lncRNA upstream 1380185 10973717 ~ 10985904 (-) False XLOC_009041
TCONS_00018813 lncRNA upstream 1390733 10984265 ~ 10985904 (-) False XLOC_009041
TCONS_00018814 lncRNA upstream 1390733 10984265 ~ 10986106 (-) True XLOC_009041
TCONS_00017808 mRNA downstream 23501 9370988 ~ 9421481 (-) False XLOC_009035
TCONS_00017807 mRNA downstream 23501 9370988 ~ 9421481 (-) True XLOC_009035
TCONS_00017806 mRNA downstream 25510 9367101 ~ 9419472 (-) False XLOC_009035
TCONS_00017804 mRNA downstream 123012 9315177 ~ 9321970 (-) False XLOC_009034
TCONS_00017805 mRNA downstream 123061 9315970 ~ 9321921 (-) True XLOC_009034
TCONS_00017811 mRNA upstream 8111 9601643 ~ 9631592 (-) True XLOC_009037
TCONS_00017814 mRNA upstream 407021 10000553 ~ 10455569 (-) False XLOC_009038
TCONS_00017816 mRNA upstream 407021 10000553 ~ 10455569 (-) False XLOC_009038
TCONS_00017817 mRNA upstream 407021 10000553 ~ 10455569 (-) False XLOC_009038
TCONS_00017815 mRNA upstream 407021 10000553 ~ 10455569 (-) False XLOC_009038
TCONS_00017798 other downstream 457223 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 588603 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017778 other downstream 2436044 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017773 other downstream 2478737 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017772 other downstream 2478743 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017810 other upstream 8105 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017819 other upstream 592522 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017830 other upstream 2382611 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017854 other upstream 4230940 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 4483007 14076539 ~ 14083113 (-) False XLOC_009064

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000154_00641532_00674274.mRNA True 1947 mRNA 0.54 9 CI01000154 641532 ~ 674274 (+)