RNA id: TCONS_00017810


Basic Information

Item Value
RNA id TCONS_00017810
length 798
RNA type nonsense_mediated_decay
GC content 0.46
exon number 9
gene id XLOC_009037
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9601637 ~ 9631592 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGACAGCTGCATCTGGAGGTGATGGCAGGGATGTTttactggaatttgataccgcatggcgaacggaaagacatgcatgatcctttaagTGCCTTTTCAGCTGTGTACACATTTGGACCCACGTTCAGAGCAGAGAATTCTCAAAGCAGGAGGCACTTGGCTGAGTTTTATATGGTAGAGGCAGAGATCGCTTTCACAGAGTCACTAGATGACCTTATGAAGGTAATGGAGGACTTATTCAAGGCTGCCACAGAGCATGTGTTTTCAAATTGCACAGAGGATGTGGAGTTATTTCACAAACATGTGGCACCAGGACATCGGGAGCAAGTGGATCCCATGTTGAACAGAAAATTTAATGTTGGGGCTGTGATCTTCAGACTGAACATGAGAAGTTCCTTGTTAAGCACTGCGGAAACACCCCTGTGTTTGTTGTAAACTATCCCTACGAGTTAAAGCCATTCTATGCCAGAGATAACCAGGACCACCCCAGACATACAGCAGCTGCTGTAGACCTCTTGGTTCCTGGTGTCGGGGAGCTTTGTGGTGGATCTCTGAGAGAAGAGAGACTACATCTTTTAACCCAAAGACTATCACAGGCTGGATTGGAGGACACATATGCATGGTATCTACAGCTGAGAGAATTTGGCTCCGTACCTCATGGTGGTTTTGGGATGGGGTTTGAGAGGTacctgcaatgcattctgggactCAACAATATCAAAGATGCGATTCCATTTGCAAGGTTCTCGCACTCCTGCCAGCTTTGATGAAGtcttataaaatgaaaacaatgactg

Function

GO:

id name namespace
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006421 asparaginyl-tRNA aminoacylation biological_process
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0004816 asparagine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-596 Predicted to enable ATP binding activity; asparagine-tRNA ligase activity; and nucleic acid binding activity. Predicted to act upstream of or within asparaginyl-tRNA aminoacylation. Is expressed in female organism. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 94 and combined oxidative phosphorylation deficiency 24. Orthologous to human NARS2 (asparaginyl-tRNA synthetase 2, mitochondrial).

Ensembl:

ensembl_id ENSDART00000170354

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019123 lncRNA downstream 410360 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00019122 lncRNA downstream 999543 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00019121 lncRNA downstream 1207036 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019120 lncRNA downstream 2536324 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00017779 lncRNA downstream 2566915 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00018812 lncRNA upstream 826704 10446657 ~ 10448625 (-) False XLOC_009038
TCONS_00017821 lncRNA upstream 1136257 10756210 ~ 10759101 (-) True XLOC_009040
TCONS_00017822 lncRNA upstream 1353764 10973717 ~ 10985904 (-) False XLOC_009041
TCONS_00018813 lncRNA upstream 1364312 10984265 ~ 10985904 (-) False XLOC_009041
TCONS_00018814 lncRNA upstream 1364312 10984265 ~ 10986106 (-) True XLOC_009041
TCONS_00017809 mRNA downstream 8105 9444982 ~ 9593532 (-) True XLOC_009036
TCONS_00017808 mRNA downstream 180156 9370988 ~ 9421481 (-) False XLOC_009035
TCONS_00017807 mRNA downstream 180156 9370988 ~ 9421481 (-) True XLOC_009035
TCONS_00017806 mRNA downstream 182165 9367101 ~ 9419472 (-) False XLOC_009035
TCONS_00017804 mRNA downstream 279667 9315177 ~ 9321970 (-) False XLOC_009034
TCONS_00017814 mRNA upstream 380600 10000553 ~ 10455569 (-) False XLOC_009038
TCONS_00017816 mRNA upstream 380600 10000553 ~ 10455569 (-) False XLOC_009038
TCONS_00017817 mRNA upstream 380600 10000553 ~ 10455569 (-) False XLOC_009038
TCONS_00017815 mRNA upstream 380600 10000553 ~ 10455569 (-) False XLOC_009038
TCONS_00017813 mRNA upstream 380600 10000553 ~ 10455569 (-) False XLOC_009038
TCONS_00017798 other downstream 613878 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 745258 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017778 other downstream 2592699 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017773 other downstream 2635392 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017772 other downstream 2635398 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017819 other upstream 566101 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017830 other upstream 2356190 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017854 other upstream 4204519 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 4456586 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017866 other upstream 4565435 14185388 ~ 14193896 (-) False XLOC_009066

Expression Profile

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