Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00017818 |
| length | 9523 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 28 |
| gene id | XLOC_009038 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 10000553 ~ 10455569 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0032289 | central nervous system myelin formation | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0010976 | positive regulation of neuron projection development | biological_process |
| GO:2000543 | positive regulation of gastrulation | biological_process |
| GO:0031641 | regulation of myelination | biological_process |
| GO:0031643 | positive regulation of myelination | biological_process |
| GO:0048666 | neuron development | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | biological_process |
| GO:0007157 | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules | biological_process |
| GO:0048714 | positive regulation of oligodendrocyte differentiation | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| GO:0050839 | cell adhesion molecule binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990714-20 | Predicted to enable cell adhesion molecule binding activity; protein heterodimerization activity; and protein homodimerization activity. Acts upstream of or within axon guidance. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Predicted to be active in neuron projection. Is expressed in several structures, including brain; midbrain hindbrain boundary neural rod; neural tube; optic vesicle; and retina. Human ortholog(s) of this gene implicated in essential tremor 5. Orthologous to human TENM4 (teneurin transmembrane protein 4). |
| ensembl_id | ENSDART00000171013 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00019123 | lncRNA | downstream | 811531 | 9189153 ~ 9191277 (-) | True | XLOC_009031 |
| TCONS_00019122 | lncRNA | downstream | 1400714 | 8599591 ~ 8602094 (-) | True | XLOC_009025 |
| TCONS_00019121 | lncRNA | downstream | 1608207 | 8350029 ~ 8394601 (-) | True | XLOC_009023 |
| TCONS_00019120 | lncRNA | downstream | 2937495 | 7064468 ~ 7065313 (-) | True | XLOC_009017 |
| TCONS_00017779 | lncRNA | downstream | 2968086 | 7032097 ~ 7034722 (-) | True | XLOC_009016 |
| TCONS_00018812 | lncRNA | upstream | 105609 | 10446657 ~ 10448625 (-) | False | XLOC_009038 |
| TCONS_00017821 | lncRNA | upstream | 415162 | 10756210 ~ 10759101 (-) | True | XLOC_009040 |
| TCONS_00017822 | lncRNA | upstream | 632669 | 10973717 ~ 10985904 (-) | False | XLOC_009041 |
| TCONS_00018813 | lncRNA | upstream | 643217 | 10984265 ~ 10985904 (-) | False | XLOC_009041 |
| TCONS_00018814 | lncRNA | upstream | 643217 | 10984265 ~ 10986106 (-) | True | XLOC_009041 |
| TCONS_00017811 | mRNA | downstream | 371216 | 9601643 ~ 9631592 (-) | True | XLOC_009037 |
| TCONS_00017809 | mRNA | downstream | 409276 | 9444982 ~ 9593532 (-) | True | XLOC_009036 |
| TCONS_00017808 | mRNA | downstream | 581327 | 9370988 ~ 9421481 (-) | False | XLOC_009035 |
| TCONS_00017807 | mRNA | downstream | 581327 | 9370988 ~ 9421481 (-) | True | XLOC_009035 |
| TCONS_00017806 | mRNA | downstream | 583336 | 9367101 ~ 9419472 (-) | False | XLOC_009035 |
| TCONS_00017820 | mRNA | upstream | 105807 | 10446855 ~ 10455438 (-) | True | XLOC_009038 |
| TCONS_00017824 | mRNA | upstream | 877198 | 11218246 ~ 11303691 (-) | True | XLOC_009043 |
| TCONS_00017825 | mRNA | upstream | 967414 | 11308462 ~ 11341635 (-) | True | XLOC_009044 |
| TCONS_00017826 | mRNA | upstream | 1338711 | 11679759 ~ 11683529 (-) | False | XLOC_009046 |
| TCONS_00017827 | mRNA | upstream | 1338801 | 11679849 ~ 11681653 (-) | True | XLOC_009046 |
| TCONS_00017810 | other | downstream | 382855 | 9601637 ~ 9619953 (-) | False | XLOC_009037 |
| TCONS_00017798 | other | downstream | 1015049 | 8987643 ~ 8987759 (-) | True | XLOC_009028 |
| TCONS_00017797 | other | downstream | 1146429 | 8839502 ~ 8856379 (-) | True | XLOC_009027 |
| TCONS_00017778 | other | downstream | 2993870 | 7008822 ~ 7008938 (-) | True | XLOC_009015 |
| TCONS_00017773 | other | downstream | 3036563 | 6948893 ~ 6966245 (-) | False | XLOC_009013 |
| TCONS_00017830 | other | upstream | 1635095 | 11976143 ~ 11976260 (-) | True | XLOC_009050 |
| TCONS_00017854 | other | upstream | 3483424 | 13824472 ~ 13824604 (-) | True | XLOC_009061 |
| TCONS_00017858 | other | upstream | 3735491 | 14076539 ~ 14083113 (-) | False | XLOC_009064 |
| TCONS_00017866 | other | upstream | 3844340 | 14185388 ~ 14193896 (-) | False | XLOC_009066 |
| TCONS_00017874 | other | upstream | 3974306 | 14315354 ~ 14315470 (-) | True | XLOC_009071 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000154_00418700_00562133.mRNA | True | 8052 | mRNA | 0.54 | 28 | CI01000154 | 418700 ~ 562133 (+) |
| bowfin (Amia calva) | AMCG00016320 | True | 8450 | mRNA | 0.54 | 26 | CM030122.1 | 15921097 ~ 16030468 (-) |
