RNA id: TCONS_00018813


Basic Information

Item Value
RNA id TCONS_00018813
length 593
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id XLOC_009041
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 10973717 ~ 10986106 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCATTTCCTGGTTTGTTAAAGGGTCGAAAAACCCCTACAGCAAATGCCAAAAAAAGACCCAGCAAGTCAACAccagtgcagttttttttttttttttttgataaacaaGACCACTGATAGAACCCCAAAGGCCTCCGATGAGTTAACTCTTTTACAGGCTGGATTAGGACGGAGGACTGTTGCCATCCCAGAAGATGCAAATCACTCAGAGATATCCAAACTTCTTACAGAGACGTATacaaaaatggcatctttggaagGAGCCTGGATGCTCTATAAAGCTGTTGGTGGGTCAGGTCAGCGGAAGTTGAATGTTGTCCCACCAGAAGCTAAAGGATATACAGGATCCTACATCATTAAAACGGCAGGAGGAAAGGGCTCTCTGTATATCCTGCCATTACAGAACAGTCTAGATATCTCCCCTTTACCCTATTCATCAAAAAATGCCAAAAGCACGATGTGCTTAATGCTTTACCGACATGCCAATTCAACTACTGGCTATGCACGTTCAGGAGTGTGAGACAGGGATATGCATTGATAGCAGTGATTGTGAATCGGACCCTGAAGTGCCACCCATTTCTACAAAAGTGAA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0051674 localization of cell biological_process
GO:0001708 cell fate specification biological_process
GO:0021532 neural tube patterning biological_process
GO:0048468 cell development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0045103 intermediate filament-based process biological_process
GO:0045104 intermediate filament cytoskeleton organization biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0043583 ear development biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0035270 endocrine system development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0030154 cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0048793 pronephros development biological_process
GO:0071599 otic vesicle development biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0016477 cell migration biological_process
GO:0035295 tube development biological_process
GO:0061448 connective tissue development biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0030182 neuron differentiation biological_process
GO:0001501 skeletal system development biological_process
GO:0043049 otic placode formation biological_process
GO:0042471 ear morphogenesis biological_process
GO:0045165 cell fate commitment biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0071363 cellular response to growth factor stimulus biological_process
GO:0051216 cartilage development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0070848 response to growth factor biological_process
GO:0072175 epithelial tube formation biological_process
GO:0048568 embryonic organ development biological_process
GO:0048839 inner ear development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0048856 anatomical structure development biological_process
GO:0048863 stem cell differentiation biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0048870 cell motility biological_process
GO:0048880 sensory system development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0030855 epithelial cell differentiation biological_process
GO:0003002 regionalization biological_process
GO:0035148 tube formation biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0007423 sensory organ development biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0048699 generation of neurons biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048704 embryonic skeletal system morphogenesis biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0030916 otic vesicle formation biological_process
GO:0071774 response to fibroblast growth factor biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017821 lncRNA downstream 225164 10756210 ~ 10759101 (-) True XLOC_009040
TCONS_00018812 lncRNA downstream 535640 10446657 ~ 10448625 (-) False XLOC_009038
TCONS_00019123 lncRNA downstream 1792988 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00019122 lncRNA downstream 2382171 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00019121 lncRNA downstream 2589664 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00017823 lncRNA upstream 111965 11097869 ~ 11099720 (-) True XLOC_009042
TCONS_00018815 lncRNA upstream 428787 11414691 ~ 11423104 (-) True XLOC_009045
TCONS_00019124 lncRNA upstream 832580 11818484 ~ 11825881 (-) True XLOC_009047
TCONS_00019125 lncRNA upstream 884280 11870184 ~ 11875956 (-) True XLOC_009048
TCONS_00019126 lncRNA upstream 1003159 11989063 ~ 11992708 (-) False XLOC_009051
TCONS_00017816 mRNA downstream 528696 10000553 ~ 10455569 (-) False XLOC_009038
TCONS_00017824 mRNA upstream 232342 11218246 ~ 11303691 (-) True XLOC_009043
TCONS_00017825 mRNA upstream 322558 11308462 ~ 11341635 (-) True XLOC_009044
TCONS_00017826 mRNA upstream 693855 11679759 ~ 11683529 (-) False XLOC_009046
TCONS_00017827 mRNA upstream 693945 11679849 ~ 11681653 (-) True XLOC_009046
TCONS_00017828 mRNA upstream 967052 11952956 ~ 11956981 (-) False XLOC_009049
TCONS_00017819 other downstream 798096 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017810 other downstream 1364312 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017798 other downstream 1996506 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 2127886 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017778 other downstream 3975327 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017830 other upstream 990239 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017854 other upstream 2838568 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 3090635 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017866 other upstream 3199484 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017874 other upstream 3329450 14315354 ~ 14315470 (-) True XLOC_009071

Expression Profile

//