RNA id: TCONS_00017823


Basic Information

Item Value
RNA id TCONS_00017823
length 752
lncRNA type lincRNA
GC content 0.34
exon number 2
gene id XLOC_009042
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11097869 ~ 11099720 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caatgggctatatgcacacatacTTCCGCGTTTGTCTAAGGTCAAGCTTCCAGTCCAGGTGATTTTAAGTGAAGGTAAACAGTATTATGGCAGAGTCGTCAATATTAACTCGCTATTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTGTCTGGATGTGCACTACAACACCGCAGAGCAACATTGAGAAAGATTTCAAGTTTTATGCATCTTCCTGCCTGTGCAATTATGAAGGTAACATTATGAGATTCAAAGCTAGAAAATTTTGTGTGTTACTCCATCCTGGAGCGGACATCCGCCAGAAAATCCATGCCATCGTCTGCTAGTTAATAGCTCCTGTTCTTGTGTGGCTGAGAGTGGGATATGCAAACATTTAGTTGCTTTGCTTTTCCAGACAGCCCATTactctgaaatgtgtaatgtgtgttgtTACATAAACAATTGTTTGGAATGGATTAATTATGTGTTAAGTTTCATGAAACAGatgggtgatttatttatttatttaatatgtattagcccaaatacctctctatgcacaagttacagaagaagcacctaattcaagaaaacaactgattcaatgttattgtttctgttcatctgaataaaataaattttttttaaatgttacattttgttgacaatttttatttcaaattatatggagtgaattatattttaaatgtacagtgaataaaataaaggtctttattctgaataaaaaaaattgcacttagaaagtagc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156308

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018814 lncRNA downstream 111763 10984265 ~ 10986106 (-) True XLOC_009041
TCONS_00017822 lncRNA downstream 111965 10973717 ~ 10985904 (-) False XLOC_009041
TCONS_00018813 lncRNA downstream 111965 10984265 ~ 10985904 (-) False XLOC_009041
TCONS_00017821 lncRNA downstream 338768 10756210 ~ 10759101 (-) True XLOC_009040
TCONS_00018812 lncRNA downstream 649244 10446657 ~ 10448625 (-) False XLOC_009038
TCONS_00018815 lncRNA upstream 314971 11414691 ~ 11423104 (-) True XLOC_009045
TCONS_00019124 lncRNA upstream 718764 11818484 ~ 11825881 (-) True XLOC_009047
TCONS_00019125 lncRNA upstream 770464 11870184 ~ 11875956 (-) True XLOC_009048
TCONS_00019126 lncRNA upstream 889343 11989063 ~ 11992708 (-) False XLOC_009051
TCONS_00017833 lncRNA upstream 889343 11989063 ~ 11992708 (-) False XLOC_009051
TCONS_00017816 mRNA downstream 642300 10000553 ~ 10455569 (-) False XLOC_009038
TCONS_00017824 mRNA upstream 118526 11218246 ~ 11303691 (-) True XLOC_009043
TCONS_00017825 mRNA upstream 208742 11308462 ~ 11341635 (-) True XLOC_009044
TCONS_00017826 mRNA upstream 580039 11679759 ~ 11683529 (-) False XLOC_009046
TCONS_00017827 mRNA upstream 580129 11679849 ~ 11681653 (-) True XLOC_009046
TCONS_00017828 mRNA upstream 853236 11952956 ~ 11956981 (-) False XLOC_009049
TCONS_00017819 other downstream 911700 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017810 other downstream 1477916 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017798 other downstream 2110110 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 2241490 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017778 other downstream 4088931 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017830 other upstream 876423 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017854 other upstream 2724752 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 2976819 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017866 other upstream 3085668 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017874 other upstream 3215634 14315354 ~ 14315470 (-) True XLOC_009071

Expression Profile

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