RNA id: TCONS_00019124


Basic Information

Item Value
RNA id TCONS_00019124
length 2396
lncRNA type read_through
GC content 0.34
exon number 2
gene id XLOC_009047
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11818484 ~ 11825881 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTCACGAAGGTCCAAGCATTTTAAAATTTCTGGCCTCGCCCCtgaaataaggtcaatattatctaCAATATTGCACAATAAAGTTCTATTGCTATCTGTGTTCACAGTATTTAAAACCTCTTTGTCTACCTCTGGTCTCCGCTGGACCTGTCCTGGCTGCTGTCTGGTGAGAAAGATCCTGGGATGCTGCAGGCCTCATCTGAGTCGTCTATCAGGGAAGATTTATCACTGTCAGAAAACTCACTGCTGTAATCCATCGGCACCTCGGCATCTGTGCTCGGACTTAATatgtctgagagagagagagataagaaAGAGTGTGTGACCGGATGAGGCTGGCTTCTTCAGACGTCATGCTGCTGTTGAGGCTACTAAGGGACTCGGTTGTGGACAGACGCAGAGACTGACTGCTGGTCAGGGACGTGGTGGACAGACGCCTTTTTCTCGCACCGCTGCAGTTATTGGGGATGCTGAAGGCACAGCGTTTGTGATAGTTCAGTCCACACCCTGCAGGGGGAGACAGTGAGAGGGGAAAATGGTCATTGTGTACAATTGtcacataaatatttaattagattaggttttaaatttatgtttatgCTCATGATATGTTTAGCAATATTTAAATGAACACgggaataatgaataaaaaatctaattttaaaagaCAGAGTTCCTACCATCGCATTTGAGACCTTGACGCACCAGGCCGAAAAGCATCTCGCCGCAGTGATCACAGAATGCAGGTGCACGATAGGAGTGCACATTTAACGCATGTGGACGAATCTGGAAATCTTCAAACGTGGCAGCAGCTGCAGAATATATCACATTTACATCGTTAAGATCAGCGCTAATGTTAAAATTGCTTTCACATGATCATTAGGGACAAAATCCAGTTCATGTACATGCAtgcattaacataatataaaactgCTTCTGTCAGTATTCATACTTTAGTCAGTACTGACCTTTACAGAAACTAAAAAATATCTTTGAAAAAGCTTTGTAAGCTTTAAGGTTAAACGTGAAGAGATAAAATGAAgagtaaaaaaaatcatgtttaatgTTTCACCTTGTAACATGAATGAaaacattattatgtttttaacaaGTTTAGTACATGGCTAAAATGTGTATGcacatgaataagcatgttatcAGTACATCTTTAGCATGATTCATTATGTTGCTAACATATTTTAACATGATGGTGTTTACTttgtttcagtaaaaaaaaaacttaaaattgtaaggaaaaaggttgcagggtttttttttatttttttttattttggttaaaagtTGAATCAACTCAGAAAAGCTGCCTTACCATTCTAAGGTAAGTcaagcttttattttcattttatgtatgtatgtatgtatgtatgtatatatgtatgtatgtatgtatgtgtgtatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtagagAGAGATTTAGAATCTACAGTAAGTGATCATTTCTTTTCACTGGCTGCAgactatagttgaagtcagaaatattagcccgcttgattatttttttccccaacttctgtccaacggagaaaatatttttttcaacacatttctaaacataatagttttgacaaCTCacatctaataactgatttattttatctttgccatgatgacggtaaataatcatttttactagatatttttcaagacacttctatacagcctaaagtgacatttaaaggcttaactatgttaattaggtttactaggcaggttagggtaattaggcaaactattgtataacaatggtttgttctgtagactattgaaaaaaaaaagttagcttaaaggggctaataattttgtcactaaaatggcttttaaaaattaaaaactgcttgtattgtagccgaaataaaacaaataagacatactgtaaaaataatttaatttttttaagttctttaagtttagaaatttgttgaaaaatcttctgtccgttaaacagaaattagggaaaaaataaacaggggggttaataattcggggggctaataattttgacttcaactgtaaataagtaatacagttgcaatcagaattattaaagaaaaaaatacattactaatgctttccttcttagactttacacacctgaaacttgcctacagcacttattcattgttgctcttagttgtgtaaattgctttcttgtcctcatttgtaagtcattttggataaaagcgtctgctaaatgactaaatgtaaatgtaaatacaaagcCTGTGGATCTATGTTGCGGTGCTTTTCAGAAATTAATTTTGCATTTGTTCCACCATAATGACATCCCAGTGTGTTTCTCCATATGGATAAATCTaactataaaaacac

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0051674 localization of cell biological_process
GO:0048468 cell development biological_process
GO:0007498 mesoderm development biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0035270 endocrine system development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0016477 cell migration biological_process
GO:0035295 tube development biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0048856 anatomical structure development biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0048870 cell motility biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0040011 locomotion biological_process
GO:0048340 paraxial mesoderm morphogenesis biological_process
GO:0048341 paraxial mesoderm formation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018815 lncRNA downstream 395380 11414691 ~ 11423104 (-) True XLOC_009045
TCONS_00017823 lncRNA downstream 718764 11097869 ~ 11099720 (-) True XLOC_009042
TCONS_00018814 lncRNA downstream 832378 10984265 ~ 10986106 (-) True XLOC_009041
TCONS_00017822 lncRNA downstream 832580 10973717 ~ 10985904 (-) False XLOC_009041
TCONS_00018813 lncRNA downstream 832580 10984265 ~ 10985904 (-) False XLOC_009041
TCONS_00019125 lncRNA upstream 44303 11870184 ~ 11875956 (-) True XLOC_009048
TCONS_00019126 lncRNA upstream 163182 11989063 ~ 11992708 (-) False XLOC_009051
TCONS_00017833 lncRNA upstream 163182 11989063 ~ 11992708 (-) False XLOC_009051
TCONS_00017831 lncRNA upstream 163182 11989063 ~ 11992903 (-) False XLOC_009051
TCONS_00017832 lncRNA upstream 163501 11989382 ~ 11991397 (-) True XLOC_009051
TCONS_00017826 mRNA downstream 134955 11679759 ~ 11683529 (-) False XLOC_009046
TCONS_00017827 mRNA downstream 136831 11679849 ~ 11681653 (-) True XLOC_009046
TCONS_00017825 mRNA downstream 476849 11308462 ~ 11341635 (-) True XLOC_009044
TCONS_00017824 mRNA downstream 514793 11218246 ~ 11303691 (-) True XLOC_009043
TCONS_00017812 mRNA downstream 1362915 10000553 ~ 10455569 (-) False XLOC_009038
TCONS_00017828 mRNA upstream 127075 11952956 ~ 11956981 (-) False XLOC_009049
TCONS_00017829 mRNA upstream 128470 11954351 ~ 11955485 (-) True XLOC_009049
TCONS_00017834 mRNA upstream 178896 12004777 ~ 12011239 (-) False XLOC_009052
TCONS_00017835 mRNA upstream 179263 12005144 ~ 12011390 (-) False XLOC_009052
TCONS_00017836 mRNA upstream 183530 12009411 ~ 12011202 (-) True XLOC_009052
TCONS_00017819 other downstream 1632315 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017810 other downstream 2198531 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017798 other downstream 2830725 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 2962105 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017778 other downstream 4809546 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017830 other upstream 150262 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017854 other upstream 1998591 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 2250658 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017866 other upstream 2359507 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017874 other upstream 2489473 14315354 ~ 14315470 (-) True XLOC_009071

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU152433 True 310 TUCP 0.54 2 NC_056713.1 1844999 ~ 1845494 (-)