RNA id: TCONS_00017836


Basic Information

Item Value
RNA id TCONS_00017836
length 549
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_009052
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 12004777 ~ 12011390 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCAGTTCTACATAATAACAGCACAACACACAGCTGAAGGACAAATAAGTTTAGTCAAGTTTAAgAACAAAGATGATACAGTAATGCATCATCATAAGGTATGGAGTGCATCGATAACAAGGAGGACCACTGAAAAAAATAAGATGCCATACCCTCAATCAGGCTATGAATATCTAATTTGACCAAAAGACAGCTAATAAACGAACAAACATCCGAACAAAATGTCTTTACATCGGAAAAATGTTCCAGACCCAGGGCCCCTTACTACTAAAATAGTGTCTGAAATTGACAGGGACAAGCATATTTTACTGTATATGCTGGACCTGCACAGGGAAAAGGTGGCACCTCTGGATCTGACAACAATGCTTTATGAAATCACTCCAAGCACTGAAGACAACATTCCACAGGACCCAACAGAGCTCTCAAAGTCATTCCTCCGTCGACTGTGGCTTTCTAATCCCCAAGCCCGTAGCACTTGCTGCAAGGTTGTAGTAGGAGAGTACGGTTTGGACATGGATGAAAATTCACAATGTGCTATCAATCCTTT

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-181 Predicted to enable GTP binding activity. Predicted to be located in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDART00000160427

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017831 lncRNA downstream 16508 11989063 ~ 11992903 (-) False XLOC_009051
TCONS_00019126 lncRNA downstream 16703 11989063 ~ 11992708 (-) False XLOC_009051
TCONS_00017833 lncRNA downstream 16703 11989063 ~ 11992708 (-) False XLOC_009051
TCONS_00017832 lncRNA downstream 18014 11989382 ~ 11991397 (-) True XLOC_009051
TCONS_00019125 lncRNA downstream 133455 11870184 ~ 11875956 (-) True XLOC_009048
TCONS_00017841 lncRNA upstream 262745 12273947 ~ 12274863 (-) False XLOC_009055
TCONS_00019127 lncRNA upstream 399782 12410984 ~ 12416090 (-) False XLOC_009057
TCONS_00019128 lncRNA upstream 399782 12410984 ~ 12416108 (-) False XLOC_009057
TCONS_00017845 lncRNA upstream 399782 12410984 ~ 12416138 (-) True XLOC_009057
TCONS_00017847 lncRNA upstream 504986 12516188 ~ 12545683 (-) False XLOC_009059
TCONS_00017828 mRNA downstream 52430 11952956 ~ 11956981 (-) False XLOC_009049
TCONS_00017829 mRNA downstream 53926 11954351 ~ 11955485 (-) True XLOC_009049
TCONS_00017826 mRNA downstream 325882 11679759 ~ 11683529 (-) False XLOC_009046
TCONS_00017827 mRNA downstream 327758 11679849 ~ 11681653 (-) True XLOC_009046
TCONS_00017825 mRNA downstream 667776 11308462 ~ 11341635 (-) True XLOC_009044
TCONS_00017837 mRNA upstream 59835 12071037 ~ 12113045 (-) False XLOC_009053
TCONS_00017838 mRNA upstream 78150 12089352 ~ 12229874 (-) True XLOC_009053
TCONS_00017839 mRNA upstream 239842 12251044 ~ 12270857 (-) False XLOC_009054
TCONS_00017840 mRNA upstream 246799 12258001 ~ 12258851 (-) True XLOC_009054
TCONS_00017842 mRNA upstream 262870 12274072 ~ 12319134 (-) False XLOC_009055
TCONS_00017830 other downstream 33151 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017819 other downstream 1823242 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017810 other downstream 2389458 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017798 other downstream 3021652 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 3153032 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017854 other upstream 1813270 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 2065337 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017866 other upstream 2174186 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017874 other upstream 2304152 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017882 other upstream 2624467 14635669 ~ 14635785 (-) True XLOC_009076

Expression Profile

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