RNA id: TCONS_00017840


Basic Information

Item Value
RNA id TCONS_00017840
length 168
RNA type mRNA
GC content 0.49
exon number 3
gene id XLOC_009054
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 12251044 ~ 12270857 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCTCAACAAAGTTCtttttcACTATGAGACTCTGCGGATTGGAGGCTTGGTGTTTGCTGGGGTCCTTGTGGTCCTGTCTATCTTCCTCCTGACTGGTAACCGCATTCGACGGTGTGGCAAGGGGAAGGTAAGTGCATTCAACTCACGTGTTTCTGATGACATCTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000180656

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017831 lncRNA downstream 265098 11989063 ~ 11992903 (-) False XLOC_009051
TCONS_00019126 lncRNA downstream 265293 11989063 ~ 11992708 (-) False XLOC_009051
TCONS_00017833 lncRNA downstream 265293 11989063 ~ 11992708 (-) False XLOC_009051
TCONS_00017832 lncRNA downstream 266604 11989382 ~ 11991397 (-) True XLOC_009051
TCONS_00019125 lncRNA downstream 382045 11870184 ~ 11875956 (-) True XLOC_009048
TCONS_00017841 lncRNA upstream 15096 12273947 ~ 12274863 (-) False XLOC_009055
TCONS_00019127 lncRNA upstream 152133 12410984 ~ 12416090 (-) False XLOC_009057
TCONS_00019128 lncRNA upstream 152133 12410984 ~ 12416108 (-) False XLOC_009057
TCONS_00017845 lncRNA upstream 152133 12410984 ~ 12416138 (-) True XLOC_009057
TCONS_00017847 lncRNA upstream 257337 12516188 ~ 12545683 (-) False XLOC_009059
TCONS_00017838 mRNA downstream 28127 12089352 ~ 12229874 (-) True XLOC_009053
TCONS_00017837 mRNA downstream 144956 12071037 ~ 12113045 (-) False XLOC_009053
TCONS_00017835 mRNA downstream 246611 12005144 ~ 12011390 (-) False XLOC_009052
TCONS_00017834 mRNA downstream 246762 12004777 ~ 12011239 (-) False XLOC_009052
TCONS_00017842 mRNA upstream 15221 12274072 ~ 12319134 (-) False XLOC_009055
TCONS_00017843 mRNA upstream 15458 12274309 ~ 12319065 (-) True XLOC_009055
TCONS_00017844 mRNA upstream 67310 12326161 ~ 12360409 (-) True XLOC_009056
TCONS_00017846 mRNA upstream 208001 12466852 ~ 12500938 (-) True XLOC_009058
TCONS_00017848 mRNA upstream 263990 12522841 ~ 12545683 (-) False XLOC_009059
TCONS_00017830 other downstream 281741 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017819 other downstream 2071832 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017810 other downstream 2638048 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017798 other downstream 3270242 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 3401622 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017854 other upstream 1565621 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 1817688 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017866 other upstream 1926537 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017874 other upstream 2056503 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017882 other upstream 2376818 14635669 ~ 14635785 (-) True XLOC_009076

Expression Profile

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