Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00017843 |
| length | 844 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 8 |
| gene id | XLOC_009055 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 12273947 ~ 12319134 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0043269 | regulation of ion transport | biological_process |
| GO:0050877 | nervous system process | biological_process |
| GO:0009581 | detection of external stimulus | biological_process |
| GO:0009582 | detection of abiotic stimulus | biological_process |
| GO:0009583 | detection of light stimulus | biological_process |
| GO:0009314 | response to radiation | biological_process |
| GO:0050953 | sensory perception of light stimulus | biological_process |
| GO:0007600 | sensory perception | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0007602 | phototransduction | biological_process |
| GO:0009416 | response to light stimulus | biological_process |
| GO:0003008 | system process | biological_process |
| GO:0051606 | detection of stimulus | biological_process |
| GO:0018298 | protein-chromophore linkage | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0071482 | cellular response to light stimulus | biological_process |
| GO:2000649 | regulation of sodium ion transmembrane transporter activity | biological_process |
| GO:0045111 | intermediate filament cytoskeleton | cellular_component |
| GO:0042995 | cell projection | cellular_component |
| GO:0001750 | photoreceptor outer segment | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0044441 | obsolete ciliary part | cellular_component |
| GO:0044459 | obsolete plasma membrane part | cellular_component |
| GO:0005834 | heterotrimeric G-protein complex | cellular_component |
| GO:0120025 | plasma membrane bounded cell projection | cellular_component |
| GO:0005882 | intermediate filament | cellular_component |
| GO:1905360 | GTPase complex | cellular_component |
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:0097730 | non-motile cilium | cellular_component |
| GO:0097731 | 9+0 non-motile cilium | cellular_component |
| GO:0097733 | photoreceptor cell cilium | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0099106 | ion channel regulator activity | molecular_function |
| GO:0017080 | sodium channel regulator activity | molecular_function |
| GO:0009881 | photoreceptor activity | molecular_function |
| GO:0008020 | G protein-coupled photoreceptor activity | molecular_function |
| id | description |
|---|---|
| ko02000 | Transporters |
| id | description |
|---|---|
| ZDB-GENE-030131-5919 | Predicted to enable sodium channel regulator activity. Predicted to be involved in regulation of sodium ion transmembrane transporter activity. Predicted to act upstream of or within ion transport and regulation of ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region; central nervous system; and head. Orthologous to human FXYD6 (FXYD domain containing ion transport regulator 6). |
| ensembl_id | ENSDART00000162973 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00017831 | lncRNA | downstream | 281406 | 11989063 ~ 11992903 (-) | False | XLOC_009051 |
| TCONS_00019126 | lncRNA | downstream | 281601 | 11989063 ~ 11992708 (-) | False | XLOC_009051 |
| TCONS_00017833 | lncRNA | downstream | 281601 | 11989063 ~ 11992708 (-) | False | XLOC_009051 |
| TCONS_00017832 | lncRNA | downstream | 282912 | 11989382 ~ 11991397 (-) | True | XLOC_009051 |
| TCONS_00019125 | lncRNA | downstream | 398353 | 11870184 ~ 11875956 (-) | True | XLOC_009048 |
| TCONS_00019127 | lncRNA | upstream | 91919 | 12410984 ~ 12416090 (-) | False | XLOC_009057 |
| TCONS_00019128 | lncRNA | upstream | 91919 | 12410984 ~ 12416108 (-) | False | XLOC_009057 |
| TCONS_00017845 | lncRNA | upstream | 91919 | 12410984 ~ 12416138 (-) | True | XLOC_009057 |
| TCONS_00017847 | lncRNA | upstream | 197123 | 12516188 ~ 12545683 (-) | False | XLOC_009059 |
| TCONS_00017849 | lncRNA | upstream | 207352 | 12526417 ~ 12545683 (-) | True | XLOC_009059 |
| TCONS_00017839 | mRNA | downstream | 3452 | 12251044 ~ 12270857 (-) | False | XLOC_009054 |
| TCONS_00017840 | mRNA | downstream | 15458 | 12258001 ~ 12258851 (-) | True | XLOC_009054 |
| TCONS_00017838 | mRNA | downstream | 44435 | 12089352 ~ 12229874 (-) | True | XLOC_009053 |
| TCONS_00017837 | mRNA | downstream | 161264 | 12071037 ~ 12113045 (-) | False | XLOC_009053 |
| TCONS_00017835 | mRNA | downstream | 262919 | 12005144 ~ 12011390 (-) | False | XLOC_009052 |
| TCONS_00017844 | mRNA | upstream | 7096 | 12326161 ~ 12360409 (-) | True | XLOC_009056 |
| TCONS_00017846 | mRNA | upstream | 147787 | 12466852 ~ 12500938 (-) | True | XLOC_009058 |
| TCONS_00017848 | mRNA | upstream | 203776 | 12522841 ~ 12545683 (-) | False | XLOC_009059 |
| TCONS_00017850 | mRNA | upstream | 788277 | 13107342 ~ 13253724 (-) | False | XLOC_009060 |
| TCONS_00017851 | mRNA | upstream | 788282 | 13107347 ~ 13208607 (-) | False | XLOC_009060 |
| TCONS_00017830 | other | downstream | 298049 | 11976143 ~ 11976260 (-) | True | XLOC_009050 |
| TCONS_00017819 | other | downstream | 2088140 | 10186054 ~ 10186169 (-) | True | XLOC_009039 |
| TCONS_00017810 | other | downstream | 2654356 | 9601637 ~ 9619953 (-) | False | XLOC_009037 |
| TCONS_00017798 | other | downstream | 3286550 | 8987643 ~ 8987759 (-) | True | XLOC_009028 |
| TCONS_00017797 | other | downstream | 3417930 | 8839502 ~ 8856379 (-) | True | XLOC_009027 |
| TCONS_00017854 | other | upstream | 1505407 | 13824472 ~ 13824604 (-) | True | XLOC_009061 |
| TCONS_00017858 | other | upstream | 1757474 | 14076539 ~ 14083113 (-) | False | XLOC_009064 |
| TCONS_00017866 | other | upstream | 1866323 | 14185388 ~ 14193896 (-) | False | XLOC_009066 |
| TCONS_00017874 | other | upstream | 1996289 | 14315354 ~ 14315470 (-) | True | XLOC_009071 |
| TCONS_00017882 | other | upstream | 2316604 | 14635669 ~ 14635785 (-) | True | XLOC_009076 |
