RNA id: TCONS_00019127


Basic Information

Item Value
RNA id TCONS_00019127
length 1138
lncRNA type inter_gene
GC content 0.34
exon number 4
gene id XLOC_009057
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 12410984 ~ 12416138 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCAGGCAAGTTAGCGACACAGAAAGTTAGCACTGTTTCAGAAAAAAAGACTTCTCTGAGAGTAAAAGAACAATCATCTGGATTTAAGTTTACAAACTCTTCTGAACACATCATACGAAAGGAAAAGGCATCATGGCTCCACAACAAAATCCATTGGGATAGCCGTTGCATTTGGGATTTTAGGATTGTTCGTGCTAATCTGTGTAGTGCAAATCTGCTGCAAGAAAAAGTGCTGCAAGCGTAAAAAGCCTTCAGTGAAGGATAAAATTTTACAAAAAGTCGGGATAAAGAAATCCACGCCTCCATTTTCAGTTAGCAGGATCGTCGACAAGAAATAACCGTCATCACCGCACCTATTATTCTCTCGATACCTGTAAATAGTGTATATACAGCCTAGATTCACAACACTTATTTACACATTATGATGTGAAAGTATGCGTTGGtgtatttattttcttcagtTCTTTGAAAAGTCTGAATCACGTTTTTGAGGTGAAGATGTTATTAGCAATGGGGATGTTGATGATTCATCGCTGGTTAAGATAACTTTCCCACAGATATGAAAAAGCACAGCACACTTTTATTGCTATCGAGATCGATTATCTTGTCTTTTACTCTCAATGCCTGACTCTGTTTCTGTCTATCTTGTTTTTCAATCTCATCACAAAAATACACAGGACAATTCTTCCTCTCAAGCTAAATCGTTACCACATAAATGTGAGTTTAAAGGCCAACACTTAGACTGAAGAAAAAAACTGTTGCTTCAGTTCCAGTACATGGATCATTTCTTAATCGTGGAGGAAGCAATGTCAGATGATTTAATTCCTGTTAAGTAATATTATGTGTGAGATGTAATGTTGATAAGGACTCATCAAGTATGTGGTTTATAAATAGATGTACTATAATATTTAGAAATTTCTCTGTgatgagaataaataaataaaatgtttctgagattaaaaaaaaacatgaatttcatactttttaaaagacTATACATGTCGTTTATGCTTATATTTAAcaccatgaaaaaaataaaagtggaCACTTAAATTCATACAagacatttagattttttatatgtaaaggtTTGAAAACAGTAAGTATGCTGTTATAAACATATCTGTTGCACTGAAT

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0048731 system development biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0002376 immune system process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017841 lncRNA downstream 136121 12273947 ~ 12274863 (-) False XLOC_009055
TCONS_00017831 lncRNA downstream 418081 11989063 ~ 11992903 (-) False XLOC_009051
TCONS_00019126 lncRNA downstream 418276 11989063 ~ 11992708 (-) False XLOC_009051
TCONS_00017833 lncRNA downstream 418276 11989063 ~ 11992708 (-) False XLOC_009051
TCONS_00017832 lncRNA downstream 419587 11989382 ~ 11991397 (-) True XLOC_009051
TCONS_00017847 lncRNA upstream 100098 12516188 ~ 12545683 (-) False XLOC_009059
TCONS_00017849 lncRNA upstream 110327 12526417 ~ 12545683 (-) True XLOC_009059
TCONS_00019129 lncRNA upstream 790095 13206185 ~ 13208412 (-) False XLOC_009060
TCONS_00019130 lncRNA upstream 790533 13206623 ~ 13208412 (-) True XLOC_009060
TCONS_00017856 lncRNA upstream 1646523 14062613 ~ 14064302 (-) False XLOC_009063
TCONS_00017844 mRNA downstream 50575 12326161 ~ 12360409 (-) True XLOC_009056
TCONS_00017842 mRNA downstream 91850 12274072 ~ 12319134 (-) False XLOC_009055
TCONS_00017843 mRNA downstream 91919 12274309 ~ 12319065 (-) True XLOC_009055
TCONS_00017839 mRNA downstream 140127 12251044 ~ 12270857 (-) False XLOC_009054
TCONS_00017840 mRNA downstream 152133 12258001 ~ 12258851 (-) True XLOC_009054
TCONS_00017846 mRNA upstream 50762 12466852 ~ 12500938 (-) True XLOC_009058
TCONS_00017848 mRNA upstream 106751 12522841 ~ 12545683 (-) False XLOC_009059
TCONS_00017850 mRNA upstream 691252 13107342 ~ 13253724 (-) False XLOC_009060
TCONS_00017851 mRNA upstream 691257 13107347 ~ 13208607 (-) False XLOC_009060
TCONS_00017852 mRNA upstream 711040 13127130 ~ 13253724 (-) False XLOC_009060
TCONS_00017830 other downstream 434724 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017819 other downstream 2224815 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017810 other downstream 2791031 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017798 other downstream 3423225 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 3554605 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017854 other upstream 1408382 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 1660449 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017866 other upstream 1769298 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017874 other upstream 1899264 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017882 other upstream 2219579 14635669 ~ 14635785 (-) True XLOC_009076

Expression Profile

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