RNA id: TCONS_00017853


Basic Information

Item Value
RNA id TCONS_00017853
length 2866
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_009060
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 13107342 ~ 13254480 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTACAAAACTCCTACAGTAAGTTCTCCCTGAAAGAAGTAATTAAAATGGTGCAATcgacagaagaagaagaaaaaaaaaacacctccacCAGATTATGCAGCATTATTTTGTTTGTGCAATAGCACAAATTTagcaaatgaaacaaaataaataaataataataaaaagagaacAAGCTGTAATTGTGCCAACCGTCCAGTGGGACACACGTAACCAGCAGCAATACAGAAGGTAGACAACTGTAAAAGAAACACTTGAAAAAATAATACCACGGATTTGTTTCCAAAGAAAATGGAGCTAAATATATTGCGCATGGCAGCTATTATCAAGAGTGATGGTGGGAATGTTCAAACAGCGTGACACTTCTGGGTCGTTATTAATGTCCTCGCTCTTgctgcatttcattttcttttcgttcCATTTGTTTTCTgccttgaagaaaaaaaaaaaaaagaggtgcaAATCCACTGTCTAGCTGTTGTTTTTTCGGCCTGGAAATGCATTGGCCTTCTTGTCCCGAGAGGCGAAAAATCCAGACAGAAGTGCTTTTGTGTCTCGTGTAAAACGTCCCTCCTTCTTTTCTCCTCTTCACAGGTGGATGGAGCTCCAAAATCTGCAGCGCAGTCAGACGCAGCTCTGAGTGCCAGATACTCTCATGTTCCTGGGCCCATGCCTCCAGTCTCCGCTCTCTGCCAGACCGTCCACATGTAGCAGCTCCAATCTGCAGTCTGACGCCGCCTGTGGAGCCTTCATGAGCATCTGCAGCCAGTCAACACTTCTCTGATAGAGTTGCCCTGAGAGATGGAGTGGCTGATCTTCTCCCTGCTGTTACTGGCTGTGTCTGCGTCAGGGCAGCTGTGCCCCAAGCGTTGCATGTGCCAGAACCTGTCGCCATCTCTAGCTATCCTATGTGCCAAGACCGGCTTGCTTTTTGTGCCAACAGTCATCGACCGCCGCACAGTGGAGCTGCGTCTCACTGAGAACTTTATCACAGCAGTAAAAAGAAGGGATTTCGCAAACATGACCAGTCTTCTGCACTTGACTCTCTCTCGCAATACCATCAGCCAGATTATGCCTTACACTTTTGCTGATCTTAAGCGGTTACGCGCGCTCCACCTGGACAGCAACCGGCTGAGTGTCATCACGGATGACCACTTCAGAGGACTCACCAACCTACGGCACCTTATCCTTGCCAACAATCAACTGCACAACATCTCCCCACATGCATTTGACGACTTTTTGGGGACTCTCGAGGACTTGGATCTTTCATACAATAATCTTGTGGATATCCCTTGGGATACTATAGGACGTCTTACCAATGTGAACACTCTCAACATGGACCATAACCTTATAGACCACGTCCCTCTAGGAATTTTCTCGAATCTACACAAACTAGCCCGATTGGATATGACATCCAACAAGCTGAAGAAAATCCCCCCAGACCCATTGTTCCTTAGGATACCAGTTTATGCCAAGTCAAAGGGGTCACCCCTTTCTTCCCTCGTCCTCAGTTTTGGTGGAAACCCTTTACATTGTAACTGTGAGCTACTCTGGCTAAGGAGATTAACACGAGAGGATGACCTGGAAACTTGTGCATCCCCTCCTGATCTCACAGCGAAGTACTTCTGGACTATCCCAGAGGAGGAGTTTATATGTGATCCTCCTGTGATTACAAGGAAATCTCCCAAAACCTTTGCTATGGAGGGCCAACCGACTGGCCTGAAATGCAAGGCCAATGGGGACCCAGACCCGGATGTTCACTGGATCTCTCCTGAGGGCCGACTGATTGCTAACACCTCTCGTACTTTAAGCTTTAGCAATGGGAGTTTAGAGATCAACATCACTTCTCTAAAGGATACAGGAATCTTCACTTGCATCGCATCTAATGCCGCAGGGGAGTCTACAGGCACAGTGGAGCTGGTAGTCAGCCCTCTGCCACACTTAGCTAACAGCACAAACCGGATCCGAGAACCTGATCCAGGACCATCTGATATATTAACCTCTGCTAAGTCGACTTCATCCGTCAGCAATGAGACTAGGTCTCAGGAAAGGAAAGTGGTACTTGCTGAGCTTAGTGCAAATTCTGCACTCATCAGGTGGCCTTCGCAACAACACTTCCCTGGAATCAGGATGTATCAGATTCAGTACAACAGCTCAGTAGATGACACCTTGGTGTACAGAATGATTCCCTCTACAAGTTACGACTTCCTGGTGCGAGACCTGGTATCCGGAAGAGAGTACGACCTGTGCGTTTTGGCCGTCTACGATGATGGCGTGACCTCGCTGACCGCTACACGACAGGTGGGCTGCGTCACATTTGTCACAGAGACGGAGTTCAGCCAGTGTCAGTCACTCCGCAGCCACTTCCTAGGTGGCACCATGATCATCATAATTGGTGGAATCATCGTGGCCTCGGTATTGGttttcatcatcatcctcatgatCCGTTATAAAGTCTACAGCCAACATGGGGCAGATTCTGGAAAGGGAACTGCCATGACGAACGTACGTTCGCAGACAAATGGGGGGCAAGCAGCGGGGCAGGTCCCGCGCTCCAGCTCCAAAATTGTGGAGGGCCATGAGGCGTCAGGAGGAAGTTTAGGGGGAGCTGCTAATATAAAAGACTCAACTGCATTGGTGCTTGTTACAGACTCAGAGACAGCTGTGCAAATTTCGGAAATATCTTCTGAGGACATAGTGTCACCCACACAAAGGCACCATCCCAGAACTTGTATAGAACTCAAGAGACGGCCTTCGCTGTCTTGTAAAGAAGGAACAAGCTCGGACACACAGGGAGACACGGCAAGCCCGCAGGTCAGCGATGAGAAGAAGGCTCAACGAGATTGGAGTGACTTTAAAATTTGA

Function

GO:

id name namespace
GO:0099179 regulation of synaptic membrane adhesion biological_process
GO:1905606 regulation of presynapse assembly biological_process
GO:0099560 synaptic membrane adhesion biological_process
GO:0099061 integral component of postsynaptic density membrane cellular_component
GO:0045202 synapse cellular_component
GO:0098978 glutamatergic synapse cellular_component
GO:0009986 cell surface cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0099059 integral component of presynaptic active zone membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-38 Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in cell surface. Predicted to be integral component of presynaptic active zone membrane.

Ensembl:

ensembl_id ENSDART00000190499

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017847 lncRNA downstream 584239 12516188 ~ 12545683 (-) False XLOC_009059
TCONS_00017849 lncRNA downstream 584239 12526417 ~ 12545683 (-) True XLOC_009059
TCONS_00017845 lncRNA downstream 713784 12410984 ~ 12416138 (-) True XLOC_009057
TCONS_00019128 lncRNA downstream 713814 12410984 ~ 12416108 (-) False XLOC_009057
TCONS_00019127 lncRNA downstream 713832 12410984 ~ 12416090 (-) False XLOC_009057
TCONS_00017856 lncRNA upstream 808133 14062613 ~ 14064302 (-) False XLOC_009063
TCONS_00019131 lncRNA upstream 808133 14062613 ~ 14064350 (-) True XLOC_009063
TCONS_00019132 lncRNA upstream 974768 14229248 ~ 14232070 (-) True XLOC_009068
TCONS_00017870 lncRNA upstream 991610 14246090 ~ 14248047 (-) True XLOC_009069
TCONS_00017885 lncRNA upstream 1425575 14680055 ~ 14696775 (-) True XLOC_009077
TCONS_00017848 mRNA downstream 584239 12522841 ~ 12545683 (-) False XLOC_009059
TCONS_00017846 mRNA downstream 628984 12466852 ~ 12500938 (-) True XLOC_009058
TCONS_00017844 mRNA downstream 769513 12326161 ~ 12360409 (-) True XLOC_009056
TCONS_00017842 mRNA downstream 810788 12274072 ~ 12319134 (-) False XLOC_009055
TCONS_00017855 mRNA upstream 779774 14034254 ~ 14038227 (-) True XLOC_009062
TCONS_00017857 mRNA upstream 821524 14076004 ~ 14083140 (-) False XLOC_009064
TCONS_00017859 mRNA upstream 825457 14079937 ~ 14083140 (-) False XLOC_009064
TCONS_00017860 mRNA upstream 827698 14082178 ~ 14083028 (-) True XLOC_009064
TCONS_00017861 mRNA upstream 830707 14085187 ~ 14098522 (-) True XLOC_009065
TCONS_00017830 other downstream 1153662 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017819 other downstream 2943753 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017810 other downstream 3509969 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017798 other downstream 4142163 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 4273543 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017854 other upstream 569992 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 822059 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017866 other upstream 930908 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017874 other upstream 1060874 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017882 other upstream 1381189 14635669 ~ 14635785 (-) True XLOC_009076

Expression Profile

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