RNA id: TCONS_00019130


Basic Information

Item Value
RNA id TCONS_00019130
length 1371
lncRNA type sense_over
GC content 0.48
exon number 2
gene id XLOC_009060
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 13107342 ~ 13254480 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGTGGCTGATCTTCTCCCTGCTGTTACTGGCTGTGTCTGCGTCAGGGCAGCTGTGCCCCAAGCGTTGCATGTGCCAGAACCTGTCGCCATCTCTAGCTATCCTATGTGCCAAGACCGGCTTGCTTTTTGTGCCAACAGTCATCGACCGCCGCACAGTGGAGCTGCGTCTCACTGAGAACTTTATCACAGCAGTAAAAAGAAGGGATTTCGCAAACATGACCAGTCTTCTGCACTTGACTCTCTCTCGCAATACCATCAGCCAGATTATGCCTTACACTTTTGCTGATCTTAAGCGGTTACGCGCGCTCCACCTGGACAGCAACCGGCTGAGTGTCATCACGGATGACCACTTCAGAGGACTCACCAACCTACGGCACCTTATCCTTGCCAACAATCAACTGCACAACATCTCCCCACATGCATTTGACGACTTTTTGGGGACTCTCGAGGACTTGGATCTTTCATACAATAATCTTGTGGATATCCCTTGGGATACTATAGGACGTCTTACCAATGTGAACACTCTCAACATGGACCATAACCTTATAGACCACGTCCCTCTAGGAATTTTCTCGAATCTACACAAACTAGCCCGATTGGATATGACATCCAACAAGCTGAAGAAAATCCCCCCAGACCCATTGTTCCTTAGGATACCAGTTTATGCCAAGTCAAAGGGGTCACCCCTTTCTTCCCTCGTCCTCAGTTTTGGTGGAAACCCTTTACATTGTAACTGTGAGCTACTCTGGCTAAGGAGATTAACACGAGAGGATGACCTGGAAACTTGTGCATCCCCTCCTGATCTCACAGCGAAGTACTTCTGGACTATCCCAGAGGAGGAGTTTATATGTGATCCTCCTGTGATTACAAGGAAATCTCCCAAAACCTTTGCTATGGAGGGCCAACCGACTGGCCTGAAATGCAAGGCCAATGGGGACCCAGACCCGGATGTTCACTGGATCTCTCCTGAGGGCCGACTGATTGCTAACACCTCTCGTACTTTAAGCTTTAGCAATGGGAGTTTAGAGATCAACATCACTTCTCTAAAGGATACAGGAATCTTCACTTGCATCGCATCTAATGCCGCAGGGGAGTCTACAGGCACAGTGGAGCTGGTAGTCAGCCCTCTGCCACACTTAGCTAACAGCACAAACCGGATCCGAGAACCTGATCCAGGACCATCTGATATATTAACCTCTGCTAAGTCGACTTCATCCGTCAGCAATGAGACTAGGTCTCAGGAAAGGAAAGTGGTACTTGCTGAGCTTAGTGCAAATTCTGCACTCATCAGGTGGCCTTCGCAACAACACTTCCCTGGAATCAGGATGTATCAGATTCAGTACAACAGaggtattatctttctattt

Function

GO:

id name namespace
GO:0099179 regulation of synaptic membrane adhesion biological_process
GO:1905606 regulation of presynapse assembly biological_process
GO:0099560 synaptic membrane adhesion biological_process
GO:0099061 integral component of postsynaptic density membrane cellular_component
GO:0045202 synapse cellular_component
GO:0098978 glutamatergic synapse cellular_component
GO:0009986 cell surface cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0099059 integral component of presynaptic active zone membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017847 lncRNA downstream 660940 12516188 ~ 12545683 (-) False XLOC_009059
TCONS_00017849 lncRNA downstream 660940 12526417 ~ 12545683 (-) True XLOC_009059
TCONS_00017845 lncRNA downstream 790485 12410984 ~ 12416138 (-) True XLOC_009057
TCONS_00019128 lncRNA downstream 790515 12410984 ~ 12416108 (-) False XLOC_009057
TCONS_00019127 lncRNA downstream 790533 12410984 ~ 12416090 (-) False XLOC_009057
TCONS_00017856 lncRNA upstream 854201 14062613 ~ 14064302 (-) False XLOC_009063
TCONS_00019131 lncRNA upstream 854201 14062613 ~ 14064350 (-) True XLOC_009063
TCONS_00019132 lncRNA upstream 1020836 14229248 ~ 14232070 (-) True XLOC_009068
TCONS_00017870 lncRNA upstream 1037678 14246090 ~ 14248047 (-) True XLOC_009069
TCONS_00017885 lncRNA upstream 1471643 14680055 ~ 14696775 (-) True XLOC_009077
TCONS_00017848 mRNA downstream 660940 12522841 ~ 12545683 (-) False XLOC_009059
TCONS_00017846 mRNA downstream 705685 12466852 ~ 12500938 (-) True XLOC_009058
TCONS_00017844 mRNA downstream 846214 12326161 ~ 12360409 (-) True XLOC_009056
TCONS_00017842 mRNA downstream 887489 12274072 ~ 12319134 (-) False XLOC_009055
TCONS_00017855 mRNA upstream 825842 14034254 ~ 14038227 (-) True XLOC_009062
TCONS_00017857 mRNA upstream 867592 14076004 ~ 14083140 (-) False XLOC_009064
TCONS_00017859 mRNA upstream 871525 14079937 ~ 14083140 (-) False XLOC_009064
TCONS_00017860 mRNA upstream 873766 14082178 ~ 14083028 (-) True XLOC_009064
TCONS_00017861 mRNA upstream 876775 14085187 ~ 14098522 (-) True XLOC_009065
TCONS_00017830 other downstream 1230363 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017819 other downstream 3020454 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017810 other downstream 3586670 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017798 other downstream 4218864 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 4350244 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017854 other upstream 616060 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 868127 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017866 other upstream 976976 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017874 other upstream 1106942 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017882 other upstream 1427257 14635669 ~ 14635785 (-) True XLOC_009076

Expression Profile

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