RNA id: TCONS_00017858


Basic Information

Item Value
RNA id TCONS_00017858
length 726
RNA type nonsense_mediated_decay
GC content 0.40
exon number 6
gene id XLOC_009064
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14076004 ~ 14083140 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAATCGGCGCTACAGCAGGAGAACTGAAGACGGACAAGTGTTTGgttctttataaatgtatttttattccaCACCTGAAGATACGTGCAAGCAGTATGGCAGATGACGCTCTGTTTGAGTTCCTCCACATGGAGATTGTTGCTCATGTTTACAAAGAGCAGGCGACCCGTGATGACATTGATAAGGAGCGAGTGACGTGTGTTTCTACTCTAGAGTTGATGGGCTTCAGAGTTGGACAAGGACTTATTGAAAGGGCACATACGTCTTGCAGGATAATAAGTTTGCACTACTCACTCAGTTTTCCAGTGGAAAGCAATACCTTGAAGAGGCCCCTAAATATTTGGCCTTTTCCTGCGGGATGATTCGAGGAGCTCTTTCTAACCTGGGTCTGGAGAGTGTGGTCACTGCTGAGGTTTCTCTAATGCCATCATgcAAGTTCCAGGTTGTTGTTCAGAAACTGTAGGATGGAGAAGAAGAGAAATGAACTTTTATATGTGAATGTGAGTTAGATGAACCTATATTCGACATGTTtacaacatttgtttttcatataatGCGGTTTCGAGTCATATTTTGGTGAGACTGTTTCATAATTCCTCTAAATATTTCGCTCCACCAGATGGATTTGGAAATATATTGATTGTCATAAATTCTACCTCAAGAGCAGACTGGATTATTGTAACAATCATGGAAATATATTTTCACTAACATGACATTTCATAACC

Function

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048193 Golgi vesicle transport biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0005801 cis-Golgi network cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0030008 TRAPP complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1602 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within Golgi vesicle transport and regulation of GTPase activity. Predicted to be located in endoplasmic reticulum. Predicted to be part of TRAPP complex. Predicted to be active in cis-Golgi network and trans-Golgi network. Orthologous to human TRAPPC6A (trafficking protein particle complex subunit 6A).

Ensembl:

ensembl_id ENSDART00000137675

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019131 lncRNA downstream 12189 14062613 ~ 14064350 (-) True XLOC_009063
TCONS_00017856 lncRNA downstream 12237 14062613 ~ 14064302 (-) False XLOC_009063
TCONS_00019129 lncRNA downstream 868127 13206185 ~ 13208412 (-) False XLOC_009060
TCONS_00019130 lncRNA downstream 868127 13206623 ~ 13208412 (-) True XLOC_009060
TCONS_00017847 lncRNA downstream 1530856 12516188 ~ 12545683 (-) False XLOC_009059
TCONS_00019132 lncRNA upstream 146135 14229248 ~ 14232070 (-) True XLOC_009068
TCONS_00017870 lncRNA upstream 162977 14246090 ~ 14248047 (-) True XLOC_009069
TCONS_00017885 lncRNA upstream 596942 14680055 ~ 14696775 (-) True XLOC_009077
TCONS_00017888 lncRNA upstream 800178 14883291 ~ 14884061 (-) True XLOC_009080
TCONS_00019133 lncRNA upstream 945099 15028212 ~ 15030391 (-) True XLOC_009081
TCONS_00017855 mRNA downstream 38312 14034254 ~ 14038227 (-) True XLOC_009062
TCONS_00017853 mRNA downstream 822059 13129922 ~ 13254480 (-) False XLOC_009060
TCONS_00017850 mRNA downstream 822815 13107342 ~ 13253724 (-) False XLOC_009060
TCONS_00017852 mRNA downstream 822815 13127130 ~ 13253724 (-) False XLOC_009060
TCONS_00017851 mRNA downstream 867932 13107347 ~ 13208607 (-) False XLOC_009060
TCONS_00017861 mRNA upstream 2074 14085187 ~ 14098522 (-) True XLOC_009065
TCONS_00017862 mRNA upstream 80080 14163193 ~ 14194208 (-) False XLOC_009066
TCONS_00017864 mRNA upstream 94748 14177861 ~ 14194208 (-) False XLOC_009066
TCONS_00017863 mRNA upstream 94748 14177861 ~ 14194208 (-) False XLOC_009066
TCONS_00017865 mRNA upstream 95608 14178721 ~ 14193926 (-) False XLOC_009066
TCONS_00017854 other downstream 251935 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017830 other downstream 2100279 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017819 other downstream 3890370 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017810 other downstream 4456586 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017798 other downstream 5088780 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017866 other upstream 102275 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017874 other upstream 232241 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017882 other upstream 552556 14635669 ~ 14635785 (-) True XLOC_009076
TCONS_00017891 other upstream 1138370 15221483 ~ 15224702 (-) False XLOC_009082
TCONS_00017896 other upstream 1300785 15383898 ~ 15383983 (-) True XLOC_009086

Expression Profile

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