RNA id: TCONS_00017859


Basic Information

Item Value
RNA id TCONS_00017859
length 430
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_009064
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14076004 ~ 14083140 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTACAGCAGGTGGCAGTATTGGTTGTCAGAATCGGCGCTACAGCAGGAGAACTGAAGACGGACAAGTGTTTGgttctttataaatgtatttttattccaCACCTGAAGATACGTGCAAGCAGTATGGCAGATGACGCTCTGTTTGAGTTCCTCCACATGGAGATTGTTGCTCATGTTTACAAAGAGCAGGCGACCCGTGATGACATTGATAAGGAGCGAGTGACGTGTGTTTCTACTCTAGAGTTGATGGGCTTCAGAGTTGGACAAGGACTTATTGAAAGgtttacaAAAGACTGCCCCACTTTCAAAGATGACTTGGACATAATGAAGTTCGTATGTAAAGACTTCTGGAGCACTATCTTCAAAAAACAAATCGACAACTTGAGGACCAACCATCAGGATAATAAGTTTGCACTACTCACTCAGTTTT

Function

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048193 Golgi vesicle transport biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0005801 cis-Golgi network cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0030008 TRAPP complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1602 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within Golgi vesicle transport and regulation of GTPase activity. Predicted to be located in endoplasmic reticulum. Predicted to be part of TRAPP complex. Predicted to be active in cis-Golgi network and trans-Golgi network. Orthologous to human TRAPPC6A (trafficking protein particle complex subunit 6A).

Ensembl:

ensembl_id ENSDART00000133080

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019131 lncRNA downstream 15587 14062613 ~ 14064350 (-) True XLOC_009063
TCONS_00017856 lncRNA downstream 15635 14062613 ~ 14064302 (-) False XLOC_009063
TCONS_00019129 lncRNA downstream 871525 13206185 ~ 13208412 (-) False XLOC_009060
TCONS_00019130 lncRNA downstream 871525 13206623 ~ 13208412 (-) True XLOC_009060
TCONS_00017849 lncRNA downstream 1534254 12526417 ~ 12545683 (-) True XLOC_009059
TCONS_00019132 lncRNA upstream 146108 14229248 ~ 14232070 (-) True XLOC_009068
TCONS_00017870 lncRNA upstream 162950 14246090 ~ 14248047 (-) True XLOC_009069
TCONS_00017885 lncRNA upstream 596915 14680055 ~ 14696775 (-) True XLOC_009077
TCONS_00017888 lncRNA upstream 800151 14883291 ~ 14884061 (-) True XLOC_009080
TCONS_00019133 lncRNA upstream 945072 15028212 ~ 15030391 (-) True XLOC_009081
TCONS_00017855 mRNA downstream 41710 14034254 ~ 14038227 (-) True XLOC_009062
TCONS_00017853 mRNA downstream 825457 13129922 ~ 13254480 (-) False XLOC_009060
TCONS_00017850 mRNA downstream 826213 13107342 ~ 13253724 (-) False XLOC_009060
TCONS_00017861 mRNA upstream 2047 14085187 ~ 14098522 (-) True XLOC_009065
TCONS_00017862 mRNA upstream 80053 14163193 ~ 14194208 (-) False XLOC_009066
TCONS_00017864 mRNA upstream 94721 14177861 ~ 14194208 (-) False XLOC_009066
TCONS_00017863 mRNA upstream 94721 14177861 ~ 14194208 (-) False XLOC_009066
TCONS_00017865 mRNA upstream 95581 14178721 ~ 14193926 (-) False XLOC_009066
TCONS_00017854 other downstream 255333 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017830 other downstream 2103677 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017819 other downstream 3893768 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017810 other downstream 4459984 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017798 other downstream 5092178 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017866 other upstream 102248 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017874 other upstream 232214 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017882 other upstream 552529 14635669 ~ 14635785 (-) True XLOC_009076
TCONS_00017891 other upstream 1138343 15221483 ~ 15224702 (-) False XLOC_009082
TCONS_00017896 other upstream 1300758 15383898 ~ 15383983 (-) True XLOC_009086

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000308_00063094_00067540.mRNA True 745 mRNA 0.45 5 CI01000308 62924 ~ 67626 (+)