RNA id: TCONS_00017867


Basic Information

Item Value
RNA id TCONS_00017867
length 683
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_009066
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14163193 ~ 14194208 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATTGTAACGAAGAGACGGAATGTTAGAGTTATGTGGTTAAACTTTTGTAATTCACGTATTCGTTTTATACAAATGTAACGTTAAAGAAGATGATTAACTTAGAGTTTATTCTGATTTTATAAATCTCAACAGTAGTAAGTTACATTTCCTGGAGTTCTGCAGTCTTGTCAGTGAATGGAGATGCAGTGCACACTAGTAAGTGTGGACGGAGATCGGGTGGTTTTGCCTGATGGTCGAGCTCTTATGTTTGGTCGAGGTCCTGAATCTAGAATTTCAGACAAGAAGTGCTCAAGGCATCAGGTCAAGCTTGTGGCCGATTATGCCAAACAAGAAGTTCTGGTTACACAGCTCGGCCCCAACCCTTCTTCACTGGATGGTCAGTGTTTGGGTCGTGGTGAGTCTGGATGTTTGACAACTGGCCAAACGCTGTACCTGGTTAATGAGTCCTACCCGTTCACTGTGGAATTTGCCTTTCACTGTGGAATTCAGCTGTCTTCCTCTCCTCAGAAGAAAGAAAAGATTACTAATGAAAGCAAGCAAAGACAGAAAAGCTCCAAAGAAAGCTCGGGCAGCCTTAAAAGAAACATCCATGATTACTTTTCTAAATCCCCTAAAAAGgCAGCAAAGCGACCTTACAGCCCGGAGGATGATGTCCCTCAGCCGAAACGAGGACGTGAAGATG

Function

GO:

id name namespace
GO:0046939 nucleotide phosphorylation biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0003690 double-stranded DNA binding molecular_function
GO:0046403 polynucleotide 3'-phosphatase activity molecular_function
GO:0046404 ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-061013-433 Predicted to enable double-stranded DNA binding activity; polydeoxyribonucleotide 5'-hydroxyl-kinase activity; and polynucleotide 3'-phosphatase activity. Predicted to be involved in DNA repair and nucleotide phosphorylation. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2B2 and microcephaly, seizures, and developmental delay. Orthologous to human PNKP (polynucleotide kinase 3'-phosphatase).

Ensembl:

ensembl_id ENSDART00000171197

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019131 lncRNA downstream 125746 14062613 ~ 14064350 (-) True XLOC_009063
TCONS_00017856 lncRNA downstream 125794 14062613 ~ 14064302 (-) False XLOC_009063
TCONS_00019129 lncRNA downstream 981684 13206185 ~ 13208412 (-) False XLOC_009060
TCONS_00019130 lncRNA downstream 981684 13206623 ~ 13208412 (-) True XLOC_009060
TCONS_00017849 lncRNA downstream 1644413 12526417 ~ 12545683 (-) True XLOC_009059
TCONS_00019132 lncRNA upstream 35589 14229248 ~ 14232070 (-) True XLOC_009068
TCONS_00017870 lncRNA upstream 52431 14246090 ~ 14248047 (-) True XLOC_009069
TCONS_00017885 lncRNA upstream 486396 14680055 ~ 14696775 (-) True XLOC_009077
TCONS_00017888 lncRNA upstream 689632 14883291 ~ 14884061 (-) True XLOC_009080
TCONS_00019133 lncRNA upstream 834553 15028212 ~ 15030391 (-) True XLOC_009081
TCONS_00017861 mRNA downstream 91574 14085187 ~ 14098522 (-) True XLOC_009065
TCONS_00017857 mRNA downstream 106956 14076004 ~ 14083140 (-) False XLOC_009064
TCONS_00017859 mRNA downstream 106956 14079937 ~ 14083140 (-) False XLOC_009064
TCONS_00017860 mRNA downstream 107068 14082178 ~ 14083028 (-) True XLOC_009064
TCONS_00017855 mRNA downstream 151869 14034254 ~ 14038227 (-) True XLOC_009062
TCONS_00017868 mRNA upstream 10016 14203675 ~ 14210382 (-) False XLOC_009067
TCONS_00017869 mRNA upstream 12171 14205830 ~ 14212777 (-) True XLOC_009067
TCONS_00017871 mRNA upstream 63573 14257232 ~ 14375452 (-) False XLOC_009070
TCONS_00017872 mRNA upstream 109396 14303055 ~ 14375571 (-) False XLOC_009070
TCONS_00017873 mRNA upstream 109661 14303320 ~ 14375489 (-) True XLOC_009070
TCONS_00017858 other downstream 106983 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017854 other downstream 365492 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017830 other downstream 2213836 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017819 other downstream 4003927 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017810 other downstream 4570143 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017874 other upstream 121695 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017882 other upstream 442010 14635669 ~ 14635785 (-) True XLOC_009076
TCONS_00017891 other upstream 1027824 15221483 ~ 15224702 (-) False XLOC_009082
TCONS_00017896 other upstream 1190239 15383898 ~ 15383983 (-) True XLOC_009086
TCONS_00017917 other upstream 1765717 15959376 ~ 15960468 (-) True XLOC_009094

Expression Profile

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