Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00018172 |
| length | 1671 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 10 |
| gene id | XLOC_009245 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 25273185 ~ 25319663 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030154 | cell differentiation | biological_process |
| GO:0031023 | microtubule organizing center organization | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0007281 | germ cell development | biological_process |
| GO:0000132 | establishment of mitotic spindle orientation | biological_process |
| GO:0048854 | brain morphogenesis | biological_process |
| GO:0007049 | cell cycle | biological_process |
| GO:0051012 | microtubule sliding | biological_process |
| GO:0047496 | vesicle transport along microtubule | biological_process |
| GO:2000574 | regulation of microtubule motor activity | biological_process |
| GO:0051301 | cell division | biological_process |
| GO:0007097 | nuclear migration | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0008090 | retrograde axonal transport | biological_process |
| GO:0000776 | kinetochore | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0043025 | neuronal cell body | cellular_component |
| GO:0005815 | microtubule organizing center | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005874 | microtubule | cellular_component |
| GO:0005875 | microtubule associated complex | cellular_component |
| GO:0005881 | cytoplasmic microtubule | cellular_component |
| GO:0005635 | nuclear envelope | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0070840 | dynein complex binding | molecular_function |
| GO:0051010 | microtubule plus-end binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040116-2 | Predicted to enable dynein complex binding activity; microtubule plus-end binding activity; and protein heterodimerization activity. Acts upstream of or within brain morphogenesis. Located in cytoplasm. Is expressed in several structures, including gill; heart; liver; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in lissencephaly and lissencephaly 1. Orthologous to human PAFAH1B1 (platelet activating factor acetylhydrolase 1b regulatory subunit 1). |
| ensembl_id | ENSDART00000190690 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00018168 | lncRNA | downstream | 44001 | 25215128 ~ 25229469 (-) | False | XLOC_009244 |
| TCONS_00018824 | lncRNA | downstream | 299358 | 24968092 ~ 24974112 (-) | True | XLOC_009236 |
| TCONS_00019162 | lncRNA | downstream | 351022 | 24904402 ~ 24922448 (-) | False | XLOC_009234 |
| TCONS_00019161 | lncRNA | downstream | 351059 | 24904402 ~ 24922411 (-) | False | XLOC_009234 |
| TCONS_00019160 | lncRNA | downstream | 364645 | 24904402 ~ 24908825 (-) | False | XLOC_009234 |
| TCONS_00019163 | lncRNA | upstream | 394102 | 25698812 ~ 25760624 (-) | False | XLOC_009254 |
| TCONS_00019164 | lncRNA | upstream | 394102 | 25698812 ~ 25876114 (-) | False | XLOC_009254 |
| TCONS_00019165 | lncRNA | upstream | 414034 | 25718744 ~ 25760609 (-) | False | XLOC_009254 |
| TCONS_00018193 | lncRNA | upstream | 414034 | 25718744 ~ 25760634 (-) | False | XLOC_009254 |
| TCONS_00018192 | lncRNA | upstream | 414034 | 25718744 ~ 25760643 (-) | False | XLOC_009254 |
| TCONS_00018167 | mRNA | downstream | 4442 | 25214171 ~ 25269028 (-) | False | XLOC_009244 |
| TCONS_00018170 | mRNA | downstream | 4442 | 25242659 ~ 25269028 (-) | True | XLOC_009244 |
| TCONS_00018166 | mRNA | downstream | 64162 | 25197427 ~ 25209308 (-) | True | XLOC_009243 |
| TCONS_00018165 | mRNA | downstream | 75363 | 25172671 ~ 25198107 (-) | False | XLOC_009243 |
| TCONS_00018164 | mRNA | downstream | 146628 | 25101948 ~ 25126842 (-) | True | XLOC_009242 |
| TCONS_00018174 | mRNA | upstream | 16862 | 25321572 ~ 25367309 (-) | False | XLOC_009246 |
| TCONS_00018175 | mRNA | upstream | 40616 | 25345326 ~ 25349809 (-) | False | XLOC_009246 |
| TCONS_00018176 | mRNA | upstream | 49954 | 25354664 ~ 25365570 (-) | False | XLOC_009246 |
| TCONS_00018177 | mRNA | upstream | 52520 | 25357230 ~ 25365319 (-) | True | XLOC_009246 |
| TCONS_00018178 | mRNA | upstream | 71213 | 25375923 ~ 25392589 (-) | True | XLOC_009247 |
| TCONS_00018169 | other | downstream | 4829 | 25238489 ~ 25268641 (-) | False | XLOC_009244 |
| TCONS_00018157 | other | downstream | 179753 | 25084821 ~ 25093717 (-) | False | XLOC_009240 |
| TCONS_00018151 | other | downstream | 364991 | 24908394 ~ 24908479 (-) | True | XLOC_009234 |
| TCONS_00018142 | other | downstream | 1114403 | 24158953 ~ 24159067 (-) | True | XLOC_009227 |
| TCONS_00018102 | other | downstream | 2318338 | 22955017 ~ 22955132 (-) | True | XLOC_009204 |
| TCONS_00018187 | other | upstream | 273478 | 25578188 ~ 25579500 (-) | False | XLOC_009252 |
| TCONS_00018188 | other | upstream | 273765 | 25578475 ~ 25584862 (-) | True | XLOC_009252 |
| TCONS_00018197 | other | upstream | 690270 | 25994980 ~ 25995095 (-) | True | XLOC_009256 |
| TCONS_00018199 | other | upstream | 770653 | 26075363 ~ 26075480 (-) | True | XLOC_009257 |
| TCONS_00018200 | other | upstream | 969930 | 26274640 ~ 26274757 (-) | True | XLOC_009259 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000072_02209186_02258457.mRNA | True | 2094 | mRNA | 0.49 | 16 | CI01000072 | 2209186 ~ 2258457 (+) |
| bowfin (Amia calva) | AMCG00005726 | True | 1215 | mRNA | 0.56 | 8 | CM030142.1 | 8404974 ~ 8417809 (-) |
