RNA id: TCONS_00018179


Basic Information

Item Value
RNA id TCONS_00018179
length 2897
RNA type mRNA
GC content 0.40
exon number 4
gene id XLOC_009248
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25398127 ~ 25435085 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGCCGCGCCTCAAGATGATTGGGCGGGGATTCTCTTGTTTGGTTAttgtaaaagagaaaaagttacaCAAGCGTCAGGATTTTGTAACGCACACGTTAGCGACTAATTTATGGATTTGCCACTCGTAATTGAGTCGACAGTGTCTTCTTAGCTTTACAGCCGAGCGAACAATCCGAAGACTGACACGAAAAGCgtagttttttatttaacaaacaaacatagaATACTCGAGAAATTTGAATTATACGAGGACTAAGATAACATAGTCGTGAATGTTTGGATTACTGAAAGTGAAGATGAAATAAAGACCGACCCTCGGGATGTCATTTATGATTAAATAGCAGATCAAACGTCACGTTAGCGGGTTTATTCAGCTGTAGACGCGCACCAGAGACTCGAGTAGAAAACAAGCGCGCGCTCAAAATATGGAGTTGAACTCGGTGATTTTAACCACTGGATCCTCGGTGGGATTTTTCAAATTAGTAAACTACGGATTGGGCAAACTTCCTATCCCCGAGACGGCTCGGAGGAACGCTTGGAAATGGAACAACATCTCCACGTCTTTCGTGCACAGCCTCATTACTGGAGTGTGGTCCGTGCTTTGTTTTTGCATGCATCCCCAGATGGCTGAGGATTTGATAGAAACACACTCCGTTTTCTCCCACGCCCTTGTATCTGTGTCAATCGGATACTTCATATATGACTTCTTAGATATGGTGATCAATCAGAAGATCATTCATTCTTGGGAACTCCTTTTCCACCATGTAGTGGTGATCACCTGTTTCGGGATCTCGGTGCTGACCTGTCGTTATGTGGGTTTTGCTGTGGTGGCGCTGCTGGTGGAGATCAACTCTGTCTTCCTGCACCTGAGGCAAGTGCTCCGCATGGCCAACCTGGCCAAAAGCACATTTTACAGAGTCAACAGCATGATCAACCTGGGCACGTATGTGGTGTTTCGCATCAACACTCTGGCCTGGATGACCCGCTGGCTGGTGCTGAACCGTGACCTCATCCCTCTATTCAGCTACACCATCGGCAGCGTGGGTCTGGCCATCATGACCGCCATGAACATCGTGCTCTTCTACCGCCTCATGAGGAGCGACTTCATGAAGGCCAGCCGCGAGAAGGAGCTgaggaaagagaaagagaaggagaAAGACATGTAGGCTAAAAACACTCCTTGTTCTTCAGCTCCAACCAAATCCACCCTCAACAACTGCGTTCCCACACTTTAGGGATCCAAACTTTCCTCTTAAACTGCTGACTTCGTTCTCATGTTAGACCTCAAGCTGTGAGAAATAATCCATCACATTTATTTACAGATGCAAACTTGTGCGCAAATACTTCTGCATGATTTAGACAATGACGCAAAACTTGAGCGAACGATGGCTTCGTCCTTAACGCATCCAGCTTGCTCTTTATCTAATTCATATGCTAATGCTGACCAACCTgaattaatatgtaaatatagaTATTTATACACCCATACACAAAATATAACATATATGAGCAAAATGTTCACTTGTGAATGTTTTCATTAACACCTTCTGCTGCTACCTCATGAGCTTGTAGCAGAATCATTATCATTCAGTTTTAAAGTGACAGTTTGCTCAAAATCTCAAAGGCATTTCTTAAAGACGTTTATTTGAATGTCCAGGCTGCTTTATTCTGTTAATGATTGCTGTGTGTGATCCCTAAAGAACTGTAACAGAAGACCATCAAAGTATTCTGAAGATATGTGATATGTTTGGTGGCAGATgatttgtttttgggtgaactgtccctttaaatgttttgaaattctGTAGGGCTGTATTGAGCACAAATTCACTAATTAGTTGTAGTAAATTAAGTGGAAAGGGACATCAAGCGCCGTGAAGTGACATGCAATATTTATCATCTGTCATAATGTCATGTCACTCATTTCCACGTCTTAAGACTCCAAATGTGACGAAGCCTATTAGATTGTTCTAGCTATGTTAGCCAAAATATCCCTGTGTGGGTTTTTTGGTTtctatttatgatttggttatagtTATGTCACACAACTGAAACTGAGAGAATCATTTTCCCTGTACTCAAGTACACAAATGCAacaaacaagaaaattaatatcGAGCAACATTTTACACATGATATTATGTGTGTTTCTGTTCTCCCAAtgaaaaatgtttctaaaacaaAGTATGAACAGAACATTTGTGCATCTGTtaagcagtttttgtttgtttctaaatCACTTGCTTTTTAAAGCAAATCATTTAAGTCTAAGGATTTGGTGATCTGTTCTTAAAGGCAGTCACTTTAAAcgaatcatttttaaatgaatcagcCATTTGTAGCAAATCATTTGAATGACTGATTCAGTGAATCCCTCATTGAGACAGCCGCTTGCTGCCATCTGCTGGTGGTTTTAATGTCATTAATACATGTATCCATGACAGGCCCAAACTAATGGAAGCCTTATTTGtgccactgaataaaaaaaaataaagctaattgcaaattaaaatgttttacttttaatcAGAAAtctgtaataaaaacaaataattctgCCTTTATAACATGCAACTGagaatgttttttctttctttcagtttttaactTTCAATTGTACGAATTTATTCCTCTCCCCCCTCTCTTTATAATTTGTAGAAAAGTTGGAATTGCAGATATAtagttttgtttaatattaacgCCCCCTCCCCCTCCCCTTAGTATTCCTCACAGAATTCTGTCTTAACTACCAAATATGAGTCTGTAAACTTAACATTGCaataaaaatctactttttttttatttcgtgGCATGTAAGGACTTTCATACAAACCATAGATCTCAAACTGCATTCCTGGTGCaccacagctctgcagttttgctctaaccctaatc

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-81 Predicted to be involved in several processes, including membrane assembly; phospholipid homeostasis; and regulation of membrane lipid distribution. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human TLCD2 (TLC domain containing 2).

Ensembl:

ensembl_id ENSDART00000112079

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018168 lncRNA downstream 168658 25215128 ~ 25229469 (-) False XLOC_009244
TCONS_00018824 lncRNA downstream 424015 24968092 ~ 24974112 (-) True XLOC_009236
TCONS_00019162 lncRNA downstream 475679 24904402 ~ 24922448 (-) False XLOC_009234
TCONS_00019161 lncRNA downstream 475716 24904402 ~ 24922411 (-) False XLOC_009234
TCONS_00019160 lncRNA downstream 489302 24904402 ~ 24908825 (-) False XLOC_009234
TCONS_00019163 lncRNA upstream 263727 25698812 ~ 25760624 (-) False XLOC_009254
TCONS_00019164 lncRNA upstream 263727 25698812 ~ 25876114 (-) False XLOC_009254
TCONS_00019165 lncRNA upstream 283659 25718744 ~ 25760609 (-) False XLOC_009254
TCONS_00018193 lncRNA upstream 283659 25718744 ~ 25760634 (-) False XLOC_009254
TCONS_00018192 lncRNA upstream 283659 25718744 ~ 25760643 (-) False XLOC_009254
TCONS_00018178 mRNA downstream 5538 25375923 ~ 25392589 (-) True XLOC_009247
TCONS_00018174 mRNA downstream 30818 25321572 ~ 25367309 (-) False XLOC_009246
TCONS_00018176 mRNA downstream 32557 25354664 ~ 25365570 (-) False XLOC_009246
TCONS_00018177 mRNA downstream 32808 25357230 ~ 25365319 (-) True XLOC_009246
TCONS_00018175 mRNA downstream 48318 25345326 ~ 25349809 (-) False XLOC_009246
TCONS_00018180 mRNA upstream 66779 25501864 ~ 25518084 (-) False XLOC_009249
TCONS_00018181 mRNA upstream 68868 25503953 ~ 25527580 (-) False XLOC_009249
TCONS_00018182 mRNA upstream 69845 25504930 ~ 25527581 (-) True XLOC_009249
TCONS_00018183 mRNA upstream 110891 25545976 ~ 25556227 (-) False XLOC_009250
TCONS_00018184 mRNA upstream 111329 25546414 ~ 25556074 (-) True XLOC_009250
TCONS_00018173 other downstream 114082 25278845 ~ 25284045 (-) True XLOC_009245
TCONS_00018169 other downstream 129486 25238489 ~ 25268641 (-) False XLOC_009244
TCONS_00018157 other downstream 304410 25084821 ~ 25093717 (-) False XLOC_009240
TCONS_00018151 other downstream 489648 24908394 ~ 24908479 (-) True XLOC_009234
TCONS_00018142 other downstream 1239060 24158953 ~ 24159067 (-) True XLOC_009227
TCONS_00018187 other upstream 143103 25578188 ~ 25579500 (-) False XLOC_009252
TCONS_00018188 other upstream 143390 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018197 other upstream 559895 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018199 other upstream 640278 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018200 other upstream 839555 26274640 ~ 26274757 (-) True XLOC_009259

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_02109877_02133927.mRNA True 1152 mRNA 0.45 8 CI01000072 2109877 ~ 2134029 (+)
bowfin (Amia calva) AMCG00005725 True 465 mRNA 0.59 2 CM030142.1 8476286 ~ 8478286 (-)