Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00018182 |
| length | 900 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 6 |
| gene id | XLOC_009249 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 25501864 ~ 25527581 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051402 | neuron apoptotic process | biological_process |
| GO:0014823 | response to activity | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0071456 | cellular response to hypoxia | biological_process |
| GO:0001654 | eye development | biological_process |
| GO:0001666 | response to hypoxia | biological_process |
| GO:1990907 | beta-catenin-TCF complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| GO:0008013 | beta-catenin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1315 | Enables beta-catenin binding activity and transcription cis-regulatory region binding activity. Acts upstream of or within several processes, including neuron apoptotic process; response to activity; and response to hypoxia. Located in nucleus. Part of beta-catenin-TCF complex. Is expressed in several structures, including digestive system; head; heart; inner ear; and pleuroperitoneal region. Orthologous to human HIF3A (hypoxia inducible factor 3 subunit alpha). |
| ensembl_id | ENSDART00000157498 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00018168 | lncRNA | downstream | 275461 | 25215128 ~ 25229469 (-) | False | XLOC_009244 |
| TCONS_00018824 | lncRNA | downstream | 530818 | 24968092 ~ 24974112 (-) | True | XLOC_009236 |
| TCONS_00019162 | lncRNA | downstream | 582482 | 24904402 ~ 24922448 (-) | False | XLOC_009234 |
| TCONS_00019161 | lncRNA | downstream | 582519 | 24904402 ~ 24922411 (-) | False | XLOC_009234 |
| TCONS_00019160 | lncRNA | downstream | 596105 | 24904402 ~ 24908825 (-) | False | XLOC_009234 |
| TCONS_00019163 | lncRNA | upstream | 171231 | 25698812 ~ 25760624 (-) | False | XLOC_009254 |
| TCONS_00019164 | lncRNA | upstream | 171231 | 25698812 ~ 25876114 (-) | False | XLOC_009254 |
| TCONS_00019165 | lncRNA | upstream | 191163 | 25718744 ~ 25760609 (-) | False | XLOC_009254 |
| TCONS_00018193 | lncRNA | upstream | 191163 | 25718744 ~ 25760634 (-) | False | XLOC_009254 |
| TCONS_00018192 | lncRNA | upstream | 191163 | 25718744 ~ 25760643 (-) | False | XLOC_009254 |
| TCONS_00018179 | mRNA | downstream | 69845 | 25398127 ~ 25435085 (-) | True | XLOC_009248 |
| TCONS_00018178 | mRNA | downstream | 112341 | 25375923 ~ 25392589 (-) | True | XLOC_009247 |
| TCONS_00018176 | mRNA | downstream | 139360 | 25354664 ~ 25365570 (-) | False | XLOC_009246 |
| TCONS_00018177 | mRNA | downstream | 139611 | 25357230 ~ 25365319 (-) | True | XLOC_009246 |
| TCONS_00018175 | mRNA | downstream | 155121 | 25345326 ~ 25349809 (-) | False | XLOC_009246 |
| TCONS_00018183 | mRNA | upstream | 18395 | 25545976 ~ 25556227 (-) | False | XLOC_009250 |
| TCONS_00018184 | mRNA | upstream | 18833 | 25546414 ~ 25556074 (-) | True | XLOC_009250 |
| TCONS_00018185 | mRNA | upstream | 29341 | 25556922 ~ 25571865 (-) | True | XLOC_009251 |
| TCONS_00018186 | mRNA | upstream | 49228 | 25576809 ~ 25584888 (-) | False | XLOC_009252 |
| TCONS_00018189 | mRNA | upstream | 60776 | 25588357 ~ 25629046 (-) | False | XLOC_009253 |
| TCONS_00018173 | other | downstream | 220885 | 25278845 ~ 25284045 (-) | True | XLOC_009245 |
| TCONS_00018169 | other | downstream | 236289 | 25238489 ~ 25268641 (-) | False | XLOC_009244 |
| TCONS_00018157 | other | downstream | 411213 | 25084821 ~ 25093717 (-) | False | XLOC_009240 |
| TCONS_00018151 | other | downstream | 596451 | 24908394 ~ 24908479 (-) | True | XLOC_009234 |
| TCONS_00018142 | other | downstream | 1345863 | 24158953 ~ 24159067 (-) | True | XLOC_009227 |
| TCONS_00018187 | other | upstream | 50607 | 25578188 ~ 25579500 (-) | False | XLOC_009252 |
| TCONS_00018188 | other | upstream | 50894 | 25578475 ~ 25584862 (-) | True | XLOC_009252 |
| TCONS_00018197 | other | upstream | 467399 | 25994980 ~ 25995095 (-) | True | XLOC_009256 |
| TCONS_00018199 | other | upstream | 547782 | 26075363 ~ 26075480 (-) | True | XLOC_009257 |
| TCONS_00018200 | other | upstream | 747059 | 26274640 ~ 26274757 (-) | True | XLOC_009259 |
