RNA id: TCONS_00018185


Basic Information

Item Value
RNA id TCONS_00018185
length 2249
RNA type mRNA
GC content 0.42
exon number 10
gene id XLOC_009251
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25556922 ~ 25571865 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAAGACTTTCAATGTCTCCTTGGACTGGCCATTTCCAGAAGCGTCTGTGGTCTGCAGAGAGGAGATGCAGGTTTTGCTCTGTCTGGTTTGTGCTTTTGACCTTTTTGGTCAGCATTATTCACTACCTTTACCGCTCGGAGATGATGGAATGGTGCATCCGACGAAACCTGCTCAGAATGACCTGTCCTTGGCAACAAAATACTTGCAGCAATTCTATAGTTTTCAAGCAGATTCTGCAGGCCGCAAAAGAAGAAGTCGTCCCTCTTTCTCTTCTAAACTGAAGAATATGCAGGGTTTTTTTGGTTTGAACGGGACAGGAACCCTGAACGCAGACACTCTCGCTGTCATGAGGACTCCTCGATGTGGCGTCTCAGATGTGGAGGATTATAGTCACCGGCGTGGAAACAGGTGGAAGAAAAACATCATCACTTATGGTGTTGGCCGGTACACCAATGACTTACCAGTGAATGCAGTGGATGATCTGATCTCTTCGGCTCTGGATGTCTGGGCCAAAGCCAGTCCTCTCACATTCTTGAGGTCGTATTCCCATCAGGCGGACATCATGGTGGAGTTTGTTGGAAAAGAACATGGAGACTTTTTCCCGTTTGATGGTCCTGACGGCACACTGGCCCATGCTTTCGGCCCAGGGGAAGGTATTGGTGGAGACGTTCATTTTGATGAAGCTGAAGTATGGACGGCTGGCTACAATGgaTTTAACCTGTATGTTGTCGCAGCCCATGAGTTTGGTCATGCACTTGGTTTGAAACACTCGCAATTGCCGGAATCGGTTATGTATCCCACATACAAACGTAGAAAAACACACAATCTGCTCTCCAGTGAAGACATCATAAACATCAACACGCTCTACGGGCCAAGAGACAAAAGGCCCTATCCTTCTTCAAGATTCAGCTGGAGCAATCCCAGCACCCCCTGGTACAGTGGTTCATATTTCCCTGTGTCGTTCAAAGACACATGTAATCCCCATCTGAAGTTTGATGCTGTAACTACTGTAGGAGATGCCATTTTCTTCTTCAGGGACAACTACATGTGGATCAAACACAATGATCAAAAGGATATAAAAGAAGGCCCCATCAGCAACTTCATGCCAAAAATTGATTGCCATATTGATGCTGCTTATTGGGTCCCACAGCGGTCAACTGCATATTTGTTTAACGGGACCACTTTCTGGACTGTGAAAGGATCACAAGTAAAAGGCAGAGCAAAAAACATCAGCAGTCTAGGCTTTCCATCGTGGGTTCAGCAGGTCGATGCTGCCGTCCACATTCACAAAACTGTACACACCCTGTTCTTCACACAACACCAGTACTGGAGGTATAATGAACACAATAAGAATATGACTGACTCAATCCCACGTAACATTTCTGATGATTTCCCAGAAATAAGTGGACCCATAAGTGCAGCAATTTATAAAGACGGctatcttcatttttttattggcTCAGATGTGTACAAATATGACATAAAACAAAAGGAAATCATTGGAACTGATAAAACAACTTCCTGGCTTGGATGTTAATAGTCATTCATTAGATTATGGTTTTGTTTAAACCTGGTATTATATTGTGTTTTGGTAAACTAAATCTCAAGTAGATGAGGACACATTACTGTTAGTATCTGGTGTTTAAATCAGTCTCTTTTGTCCACTTGCCTGAAATCTTTCATTCAAATGTCTATAGGTGGGTATAAACTTTCAATCTATCATTAAACGTTTTTTCATGCAATTTACATATGAACATGAAAGAAGACAACAGAAAATTATATGAGAACAGTTAATTTCTGCTCCACAAAACTGCATTGATCCAGCCTGATTTCACAAGAAAATGTTAGTATTTCACATTTTGtctgtttagtggctaaatcgtacAAATTTGgacaagttcagtcgtatgaaaatgtacaattttaaaaaggaagcatgacacccaaccccgcccctaaacccaaccgtcattggcaagggtggatttaaccaataagtaaGGTAAGCCGCTGCTTAGACCCCTAGGAAATCTGAGGGCCAACAAATACCTAGAAGTACCTATGatacctataaattatatatacaataGTTTTCGTCATATTTTATACAGTGAGGGTCTAAAAGATTTTAATTTGAATGTATTTGTTACGTCTGTGCAAATGTGTCGCCCACCTTCAATCATggaccaggggtgcgtttccgaaaaccatggTTAGCCAACTAAAGTCACAAGTTGCGTCTTTgcaa

Function

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0097186 amelogenesis biological_process
GO:0006508 proteolysis biological_process
GO:0030574 collagen catabolic process biological_process
GO:0031012 extracellular matrix cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100603-3 Predicted to enable metalloendopeptidase activity. Predicted to be involved in amelogenesis; collagen catabolic process; and extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix. Human ortholog(s) of this gene implicated in amelogenesis imperfecta hypomaturation type 2A2. Orthologous to human MMP20 (matrix metallopeptidase 20).

Ensembl:

ensembl_id ENSDART00000077836

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018168 lncRNA downstream 327453 25215128 ~ 25229469 (-) False XLOC_009244
TCONS_00018824 lncRNA downstream 582810 24968092 ~ 24974112 (-) True XLOC_009236
TCONS_00019162 lncRNA downstream 634474 24904402 ~ 24922448 (-) False XLOC_009234
TCONS_00019161 lncRNA downstream 634511 24904402 ~ 24922411 (-) False XLOC_009234
TCONS_00019160 lncRNA downstream 648097 24904402 ~ 24908825 (-) False XLOC_009234
TCONS_00019163 lncRNA upstream 126947 25698812 ~ 25760624 (-) False XLOC_009254
TCONS_00019164 lncRNA upstream 126947 25698812 ~ 25876114 (-) False XLOC_009254
TCONS_00019165 lncRNA upstream 146879 25718744 ~ 25760609 (-) False XLOC_009254
TCONS_00018193 lncRNA upstream 146879 25718744 ~ 25760634 (-) False XLOC_009254
TCONS_00018192 lncRNA upstream 146879 25718744 ~ 25760643 (-) False XLOC_009254
TCONS_00018183 mRNA downstream 695 25545976 ~ 25556227 (-) False XLOC_009250
TCONS_00018184 mRNA downstream 848 25546414 ~ 25556074 (-) True XLOC_009250
TCONS_00018182 mRNA downstream 29341 25504930 ~ 25527581 (-) True XLOC_009249
TCONS_00018181 mRNA downstream 29342 25503953 ~ 25527580 (-) False XLOC_009249
TCONS_00018180 mRNA downstream 38838 25501864 ~ 25518084 (-) False XLOC_009249
TCONS_00018186 mRNA upstream 4944 25576809 ~ 25584888 (-) False XLOC_009252
TCONS_00018189 mRNA upstream 16492 25588357 ~ 25629046 (-) False XLOC_009253
TCONS_00018191 mRNA upstream 23781 25595646 ~ 25613114 (-) False XLOC_009253
TCONS_00018190 mRNA upstream 23781 25595646 ~ 25613114 (-) True XLOC_009253
TCONS_00018196 mRNA upstream 338636 25910501 ~ 26089064 (-) False XLOC_009255
TCONS_00018173 other downstream 272877 25278845 ~ 25284045 (-) True XLOC_009245
TCONS_00018169 other downstream 288281 25238489 ~ 25268641 (-) False XLOC_009244
TCONS_00018157 other downstream 463205 25084821 ~ 25093717 (-) False XLOC_009240
TCONS_00018151 other downstream 648443 24908394 ~ 24908479 (-) True XLOC_009234
TCONS_00018142 other downstream 1397855 24158953 ~ 24159067 (-) True XLOC_009227
TCONS_00018187 other upstream 6323 25578188 ~ 25579500 (-) False XLOC_009252
TCONS_00018188 other upstream 6610 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018197 other upstream 423115 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018199 other upstream 503498 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018200 other upstream 702775 26274640 ~ 26274757 (-) True XLOC_009259

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_02028275_02032319.mRNA True 2223 mRNA 0.41 10 CI01000072 2027876 ~ 2032703 (+)