RNA id: TCONS_00018190


Basic Information

Item Value
RNA id TCONS_00018190
length 3045
RNA type mRNA
GC content 0.53
exon number 22
gene id XLOC_009253
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25588357 ~ 25629046 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCCAACGCTGTTCGCGCAGGGAGTCTGAAAGACCCCGACATCGCAGACCTCTTTTTTAAAGAAGACCCTGAAAGACTTTTCTCAGACCTGAGGGAGATTGGCCATGGCAGCTTTGGTGCTGTTTACTTTGCACGAGATGTGCGGACCTCAGAGGTGGTGGCCATTAAGAAAATGTCCTATAGTGGAAAACAGTCCAATGAGAAATGGCAGGATATAATAAAAGAGGTGAAATTCCTTCAGAGGATAAAGCACCCAAACAGCATAGAGTATAAAGGATGCTACCTGCGAGAGCACACAGCATGGCTGGTTATGGAGTACTGTCTGGGGTCCACCTCAGATCTCCTCGAGGtaCACAAAAAACCTTTACAGGAGATTGAGATTGCAGCGATTACTCATGGTGCTTTGCAGGGTTTGGCGTACCTCCACTCCCACAACATGATTCACAGggATATCAAGGCTGGAAACATCCTGCTCACAGAGCCTGGACAGGTGAAGCTGGCAGATTTCGGTTCTGCTTCCATCGCCTCTCCTGCCAATTCATTCGTGGGGACTCCTTATTGGATGGCCCCAGAGGTGATCTTAGCCATGGATGAGGGCCAATATGATGGAAAGGTTGACATCTGGTCTCTAGGAATAACCTCTATTGAATTAGCTGAACGAAAACCTCCGCTCTTCAACATGAATGCTATGAGTGCCTTATACCACATTGCGCAGAATGAGAGTCCATCTCTGCAGTCCAGTGAATGGACGGACTACTTCAGAAACTTTGTGGACTCCTGCTTGCAGAAGTTGCCCCAGGACAGACCACACTCTGAAGAACTGCTAAAACATGCATTTGTCCAGCGTGAGAGGCCAGAGTCTGTGCTTATTGACCTGATCCAGCGCACCAAAGATGCTGTGAGAGAGCTGGACAACCTGCAGTCCCGCAAGATGAAAAAGATCCTCTTCCAGGAGGCTCACAACGGCCCTGCGGTAGAGGTCCCAGACGATGAAGAGGTCAGTTATTGTAGTTGTACTTTGTGTTTCGTCCTGTCTATAGAAACACATTTAGAGCACAGTGTTGGGCGTACGGGCACAAGCAGCTCGGTCAACAGCCTGCCTGATGCTACAGATGCCACTGACGACAACAAGAGTGAGGTGGACCTGATGGAGAAAGACCAGACCATCATACCCAACAGCTCCATAATTCACGTTAAACCGGAGGAAGAGAGCTATCAAGAAGAAACCGAAGTTCAGAAACAGCCCACAGAGCCCCAGTCTCCCCCAGCACACACTCCACGGCGTCAGTACCGCAATCGAGAGCACTTTGCCACCATCCGCACAGCTTCCCTGGTGACGCGTCAGATTCAAGAACACGAGCAGGACTCCGAGGTGCGCGAGCAGATGTCTGGCTACAAACGTATGCGCAGGCAGCACCAGAAACACCTTCTGGCCCTGGAGAATAAGCTGAAGGGCGAGATGGACGAGCATAGACTTAAGCTGGATAAAGAACTGGAGAACCAGAGGAACAGCTTTGCTGCTGAGATGGACAAACTCATCAAAAAGCACCAGGGCACCATGGAGAAAGATGCCAAGACTTTTGCGAACGACGAGAAGAAATTCTTGCAGCACATTCAGAGCCAGCAGAAGAAGGAGCTCAACAGCTTCCTGGAGTCTCAGAAACGAGAGTACAAACTGCGCAAGGAACAGCTCAAAGAGGAACTGAATGAGAACCAGTCCACACCAAAGAAGGAGAAGCAGGAGTGGCTGTCCAAGCAGAAGGAGAACATCCAGCACTTTCAGGCAGAGGAGGAAGCCAATCTCCTGCGCCGACAGCGTCAGTATCTGGAGCTCGAGTGCCGCAGGTTCAAGCGCCGCATTCTTATTGCACGTCACAATGTGGAGCAAGATCTCATGAGAGAGGAGTTGAACAAACGCCAGACACAGAAAGATCTGGAACATGCCATGCTACTCCGACACCACGAATCCATGCAGGAGCTGGAGTTCAGGCACCTGGGCACCATCCAGAAAATGCGTGCGGAGCAGATTCGCCTGCAGCATCAGACTGAGCTCACCAACCAGCTGGAGTACAACAAGCGCAGAGAGAGGGAGCTCAGGCGCAAACATGTCATGGAGGTCCGACAGCAGCCCAAGAGCCTCAAGTCCAAAGAGCTCCAGATCAAGAAACAGTTCCAGGATGCATGTAAAATCCAGACCCGGCAGTACAAAGCCCTGCGGAACCACCTGCTGGAGAGCACGCCGAAACCCGAACACAAGACCATGCTGAAGAGACTGAAGGAGGAGCAGACCCGGAAACTAGCCATCTTAGCCGAGCAGTATGACCACACCATCAACAACATGCTCTCCACACAGGCTCTGCGTCTGGACGAGGCTCAGGAGGCGGAGTGTCAGGTGCTGAGGATGCAGCTGCAGCAGGAGTTGGAGCTGTTGAATGCCTACCAGAGTAAGATCAAGATGCAGACGGACGCACAGCAGGAGCGAGAGAGGAAAGAGCTGGAGCAGAGAGTGTCCCTGAGGAGGGCCCTGCTGGAGACCAAGATCGAAGAGGAGATGTTGACCCTGCAGAACGAGCGCACGGAGCGCATCCGCAGCCTGCTGGAGCGACAGGCCAGAGAGATCGAGGCCTTCGACTCTGAGAGCATGCGCTTGGGCTTCAGCAACATGGTCTTGGCCAACATTTCTCCTGAGGGCCTGAGCCACAGCTTCCCTGGGGCCCCGGCCAGTTGGATGCCTCATCAGCATCACTCAGACGGCTCTCAGGGGACACAGTGGGGCAGCAGCACCGGTTCAGGGGGTGGTCACCACTACCACCCCAGTCAGGGAGGAGCACAGGTTCAGCAGGCCTGGGGAAGTGGGCTTCCTCCATGGGGCCACTCCTCCTCAGGGCCCCCAGGGGCCATGCCAAAAAGCAGCGTGGGGATGCGAAACAGCCCCCAGGCGCTTAGGAGGACCACCTCAGCGGGGCGCACTGAGCAGGGCATGAGTAGGAGCACCAGCATCACATCTCAGATATCCAACGGTTCACACCTGTCCTATACATAA

Function

GO:

id name namespace
GO:0048812 neuron projection morphogenesis biological_process
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0032147 activation of protein kinase activity biological_process
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0031098 stress-activated protein kinase signaling cascade biological_process
GO:0097194 execution phase of apoptosis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130103-9 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including MAPK cascade; activation of protein kinase activity; and execution phase of apoptosis. Predicted to be active in cytoplasm. Orthologous to human TAOK1 (TAO kinase 1).

Ensembl:

ensembl_id ENSDART00000182431

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018168 lncRNA downstream 366177 25215128 ~ 25229469 (-) False XLOC_009244
TCONS_00018824 lncRNA downstream 621534 24968092 ~ 24974112 (-) True XLOC_009236
TCONS_00019162 lncRNA downstream 673198 24904402 ~ 24922448 (-) False XLOC_009234
TCONS_00019161 lncRNA downstream 673235 24904402 ~ 24922411 (-) False XLOC_009234
TCONS_00019160 lncRNA downstream 686821 24904402 ~ 24908825 (-) False XLOC_009234
TCONS_00019163 lncRNA upstream 85698 25698812 ~ 25760624 (-) False XLOC_009254
TCONS_00019164 lncRNA upstream 85698 25698812 ~ 25876114 (-) False XLOC_009254
TCONS_00019165 lncRNA upstream 105630 25718744 ~ 25760609 (-) False XLOC_009254
TCONS_00018193 lncRNA upstream 105630 25718744 ~ 25760634 (-) False XLOC_009254
TCONS_00018192 lncRNA upstream 105630 25718744 ~ 25760643 (-) False XLOC_009254
TCONS_00018186 mRNA downstream 10758 25576809 ~ 25584888 (-) False XLOC_009252
TCONS_00018185 mRNA downstream 23781 25556922 ~ 25571865 (-) True XLOC_009251
TCONS_00018183 mRNA downstream 39419 25545976 ~ 25556227 (-) False XLOC_009250
TCONS_00018184 mRNA downstream 39572 25546414 ~ 25556074 (-) True XLOC_009250
TCONS_00018182 mRNA downstream 68065 25504930 ~ 25527581 (-) True XLOC_009249
TCONS_00018196 mRNA upstream 297387 25910501 ~ 26089064 (-) False XLOC_009255
TCONS_00018198 mRNA upstream 432476 26045590 ~ 26089012 (-) True XLOC_009255
TCONS_00018202 mRNA upstream 885225 26498339 ~ 26538989 (-) True XLOC_009262
TCONS_00018203 mRNA upstream 927867 26540981 ~ 26549693 (-) False XLOC_009263
TCONS_00018204 mRNA upstream 927905 26541019 ~ 26552393 (-) False XLOC_009263
TCONS_00018188 other downstream 10784 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018187 other downstream 16146 25578188 ~ 25579500 (-) False XLOC_009252
TCONS_00018173 other downstream 311601 25278845 ~ 25284045 (-) True XLOC_009245
TCONS_00018169 other downstream 327005 25238489 ~ 25268641 (-) False XLOC_009244
TCONS_00018157 other downstream 501929 25084821 ~ 25093717 (-) False XLOC_009240
TCONS_00018197 other upstream 381866 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018199 other upstream 462249 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018200 other upstream 661526 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018201 other upstream 685515 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018239 other upstream 2033305 27646419 ~ 27646536 (-) True XLOC_009276

Expression Profile

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