RNA id: TCONS_00019163


Basic Information

Item Value
RNA id TCONS_00019163
length 853
lncRNA type inter_gene
GC content 0.44
exon number 5
gene id XLOC_009254
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25698812 ~ 25876120 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGCGTGCGCGGAAGAATTAACCGTTTCCAGAGATTGAGAACGACTACGATGAGGTTCCGTGTTTCTGGTGCAGGTAGCCAGTGAACTGAGCGAAGATCAGCGCAAGGTTTCTTGTAGGCCTATGTGGACAGGAGGAGCCGCTGCTGGCCTTTAGGACTGGAAAGTATGCGGTCTGTGGCCACAATCCCACCTCTTAGCCTGGGAACGGAAGCAGGGAGTCGCGAGGGAAAACAAGCAGACAATCAGAAATCTTGGCCTGAATGAAAGCCACATTTAGCTCAACCTTGGCAGCCTCTCCTTCAACAACATCATTCAATGTAGCTATACACCCTTTCAGCACAAATACAGGCAGTGAAAGTGATAGTGGACCAGACTTCATATGCTCGAAGATCACTGCTCTTCACTGACCAGCTGACAACCTGTCCAGAGCCAGCTGATCTATGCCAAAGTTCTACTTTGAAAAGGGATGGCAGGCCAAACCAActgttaccatgggccaactttttCCCACAGGCTCTACTTTGGCCATCTCTGGTCAAGAGGGTTGTCATCTTAAAGGTGCCCGTTTGTGATTTAAGTTGGCTTAGCTTTGGGCGGCAGGTGAGAGACTGTGTTTCAAAGACATTATGCTAACGGATAGCATTTAGGCATCACCTACTGCGCCTTTAACatcaacaaacaatgaacagttgTATGTCTATTGGCTAATATTAACAATCATCTTTGAATGCTAGAACAAATGTATTGATGTTTTTATAACATGAACAACCTGTACTACTAAACCTTACTGGAAAAAGTTAGTGTActaaatttttattattcattgcattttttaagtagtttttaGTTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018168 lncRNA downstream 469343 25215128 ~ 25229469 (-) False XLOC_009244
TCONS_00018824 lncRNA downstream 724700 24968092 ~ 24974112 (-) True XLOC_009236
TCONS_00019159 lncRNA downstream 771719 24901551 ~ 24927093 (-) False XLOC_009234
TCONS_00019168 lncRNA upstream 3901 25764525 ~ 25876113 (-) False XLOC_009254
TCONS_00019169 lncRNA upstream 3901 25764525 ~ 25876120 (-) True XLOC_009254
TCONS_00018827 lncRNA upstream 356570 26117194 ~ 26183974 (-) True XLOC_009258
TCONS_00019170 lncRNA upstream 710712 26471336 ~ 26496219 (-) True XLOC_009261
TCONS_00018828 lncRNA upstream 883735 26644359 ~ 26647276 (-) True XLOC_009266
TCONS_00018189 mRNA downstream 69766 25588357 ~ 25629046 (-) False XLOC_009253
TCONS_00018191 mRNA downstream 85698 25595646 ~ 25613114 (-) False XLOC_009253
TCONS_00018190 mRNA downstream 85698 25595646 ~ 25613114 (-) True XLOC_009253
TCONS_00018186 mRNA downstream 113924 25576809 ~ 25584888 (-) False XLOC_009252
TCONS_00018185 mRNA downstream 126947 25556922 ~ 25571865 (-) True XLOC_009251
TCONS_00018196 mRNA upstream 149877 25910501 ~ 26089064 (-) False XLOC_009255
TCONS_00018198 mRNA upstream 284966 26045590 ~ 26089012 (-) True XLOC_009255
TCONS_00018202 mRNA upstream 737715 26498339 ~ 26538989 (-) True XLOC_009262
TCONS_00018203 mRNA upstream 780357 26540981 ~ 26549693 (-) False XLOC_009263
TCONS_00018204 mRNA upstream 780395 26541019 ~ 26552393 (-) False XLOC_009263
TCONS_00018188 other downstream 113950 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018187 other downstream 119312 25578188 ~ 25579500 (-) False XLOC_009252
TCONS_00018173 other downstream 414767 25278845 ~ 25284045 (-) True XLOC_009245
TCONS_00018169 other downstream 430171 25238489 ~ 25268641 (-) False XLOC_009244
TCONS_00018157 other downstream 605095 25084821 ~ 25093717 (-) False XLOC_009240
TCONS_00018197 other upstream 234356 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018199 other upstream 314739 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018200 other upstream 514016 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018201 other upstream 538005 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018239 other upstream 1885795 27646419 ~ 27646536 (-) True XLOC_009276

Expression Profile

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