RNA id: TCONS_00019168


Basic Information

Item Value
RNA id TCONS_00019168
length 883
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_009254
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25698812 ~ 25876120 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGTGTTTCCTGATGTTTTCCCCTTTAATGATTCCATTTCCAGCAAGTTCTGCCACAGTGAAGTTTTACTTCATTTCAGGGCTCGTGTTGTCCAACAACATCATCTTTAAACCCAACAACTTTATAAAACCATTATCATTCATTCACATGAGGGGGAATTCGTGCAAGTGGCGTCGTGGAGTGCTTGTAAACTTGACCATCACAGAGATGGAGGTGGAGGCTGTGATGGGCGATGAGTGTCTTTTTCGGAATTCCTTCACTTGGACTCCCTTGTGACCATTGGGGCGGCACTCCCAGTGCTCTCAGCAGTCAGTCATGAGAGTGAAGGTCATGAGGTCTGCGGGTCGTGGAGAGGTGAGAGAGCGGAGAGAGGAAGCAGGCTTAATCTGAAAGAGACTGGCAGTTTCCTGTCTGGAGAGCCTGGCACAGAGAGGCCTCTGTCCCGCCTGAGCGTAATTCAATAAGAACCTGACATCTCCCTCTGACCTCCATGAGTCAAACTCTGACTGCAGCCACCAGCCCATGAACACTGACTCTCACACCTTCTATTCAGGGCAGACACTCAGGCCTGGTCAAAAAATGGCTCAAGTAGCCGTCGCCACTCACGTTGATAGCAGTATCACTaagaaagacatttaaaaatgaacactTGCACAAATAAAAGTCCAAATGAAATCCCATTCTCTTCAGTATCTTAATTTAGTTTCTAAATCTCAGTCctagttatttaatttaattttgatatagttatttttgtcaatgaaagtctatctgtttatctatctatatatctgtctatctatatgtttgttttttgttatttattttagtgcttttaatcttgtttattttctagattttactttgtttattaaaggggac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019167 lncRNA downstream 3862 25738920 ~ 25760663 (-) False XLOC_009254
TCONS_00018192 lncRNA downstream 3882 25718744 ~ 25760643 (-) False XLOC_009254
TCONS_00018826 lncRNA downstream 3882 25731453 ~ 25760643 (-) False XLOC_009254
TCONS_00018825 lncRNA downstream 3882 25731453 ~ 25760643 (-) False XLOC_009254
TCONS_00018193 lncRNA downstream 3891 25718744 ~ 25760634 (-) False XLOC_009254
TCONS_00018827 lncRNA upstream 241081 26117194 ~ 26183974 (-) True XLOC_009258
TCONS_00019170 lncRNA upstream 595223 26471336 ~ 26496219 (-) True XLOC_009261
TCONS_00018828 lncRNA upstream 768246 26644359 ~ 26647276 (-) True XLOC_009266
TCONS_00018216 lncRNA upstream 1115996 26992109 ~ 26994461 (-) True XLOC_009270
TCONS_00018218 lncRNA upstream 1427166 27303279 ~ 27305901 (-) False XLOC_009271
TCONS_00018189 mRNA downstream 135479 25588357 ~ 25629046 (-) False XLOC_009253
TCONS_00018191 mRNA downstream 151411 25595646 ~ 25613114 (-) False XLOC_009253
TCONS_00018190 mRNA downstream 151411 25595646 ~ 25613114 (-) True XLOC_009253
TCONS_00018186 mRNA downstream 179637 25576809 ~ 25584888 (-) False XLOC_009252
TCONS_00018185 mRNA downstream 192660 25556922 ~ 25571865 (-) True XLOC_009251
TCONS_00018196 mRNA upstream 34388 25910501 ~ 26089064 (-) False XLOC_009255
TCONS_00018198 mRNA upstream 169477 26045590 ~ 26089012 (-) True XLOC_009255
TCONS_00018202 mRNA upstream 622226 26498339 ~ 26538989 (-) True XLOC_009262
TCONS_00018203 mRNA upstream 664868 26540981 ~ 26549693 (-) False XLOC_009263
TCONS_00018204 mRNA upstream 664906 26541019 ~ 26552393 (-) False XLOC_009263
TCONS_00018188 other downstream 179663 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018187 other downstream 185025 25578188 ~ 25579500 (-) False XLOC_009252
TCONS_00018173 other downstream 480480 25278845 ~ 25284045 (-) True XLOC_009245
TCONS_00018169 other downstream 495884 25238489 ~ 25268641 (-) False XLOC_009244
TCONS_00018157 other downstream 670808 25084821 ~ 25093717 (-) False XLOC_009240
TCONS_00018197 other upstream 118867 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018199 other upstream 199250 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018200 other upstream 398527 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018201 other upstream 422516 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018239 other upstream 1770306 27646419 ~ 27646536 (-) True XLOC_009276

Expression Profile

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