RNA id: TCONS_00018198


Basic Information

Item Value
RNA id TCONS_00018198
length 709
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_009255
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25910501 ~ 26089064 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAGATGGCGGCTTCCAGTAGCGAGTTAGAAGTGATCACTGCGAAAAAGCCTAACGTGAAAGGTCCAAGGCGGGTGGCCAATCAGATACCTGAGGAGATCTTGAAAGATTCCGATCTCAACGAGGCTATTAAGGCTTTGCCTGCAAACTACAATTTTGAAATTCATAAAACAATATGGAGGGTCCGGCAAGCTAAAGCTAAGAGGGTGGCTTTGCAGTTGCCAGAGGGTCTGCAGATGTTTGCCTGTGTGATCGCTGACATCATTGAGAGAGTGCTTTTCCGGATGTCTGCTCAATACTAATGAAGGACCTTCTCGGCTGTGGAGCGATGGCTTGGCATTTGCGTTGAGGGATATGTTTAGCCCCAGGAACCGAGCGCAGAGTGTCACATTCCCTGAGGATTCATCCGTATTAGCAGAACATTATGGGCCTGAAATGGTTGtatctcactcagggctgctggttCGATTTGGAGGCGAGCGCAGAGTCAGTGAGTTGAAGCGAACGGCTTTGGATGTTTTGATTGGGTCGTGTGGAAGTCTTGCTGGCTGATGAGAGTCCCGGTTAATACAAATCCCTCTGTTTGATGTAGTTTAGCTGTCAGCCTTTCTGCAATTACATTCTGTATTCATCAACTGGCTTTTTCTGTAACTCATCTTCCTCTGGCTCTTGTTCTTTCAGCAGTGTTGATCTTGATGAATGTGATTAT

Function

GO:

id name namespace
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-050417-411 Predicted to enable transferase activity. Predicted to be involved in peptidyl-diphthamide biosynthetic process from peptidyl-histidine. Predicted to be located in cytoplasm and nucleus. Orthologous to human DPH1 (diphthamide biosynthesis 1).

Ensembl:

ensembl_id ENSDART00000152243

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019169 lncRNA downstream 169470 25764525 ~ 25876120 (-) True XLOC_009254
TCONS_00019168 lncRNA downstream 169477 25764525 ~ 25876113 (-) False XLOC_009254
TCONS_00019167 lncRNA downstream 284927 25738920 ~ 25760663 (-) False XLOC_009254
TCONS_00018195 lncRNA downstream 286107 25732136 ~ 25759483 (-) False XLOC_009254
TCONS_00018827 lncRNA upstream 28182 26117194 ~ 26183974 (-) True XLOC_009258
TCONS_00019170 lncRNA upstream 382324 26471336 ~ 26496219 (-) True XLOC_009261
TCONS_00018828 lncRNA upstream 555347 26644359 ~ 26647276 (-) True XLOC_009266
TCONS_00018216 lncRNA upstream 903097 26992109 ~ 26994461 (-) True XLOC_009270
TCONS_00018218 lncRNA upstream 1214267 27303279 ~ 27305901 (-) False XLOC_009271
TCONS_00018189 mRNA downstream 416544 25588357 ~ 25629046 (-) False XLOC_009253
TCONS_00018191 mRNA downstream 432476 25595646 ~ 25613114 (-) False XLOC_009253
TCONS_00018190 mRNA downstream 432476 25595646 ~ 25613114 (-) True XLOC_009253
TCONS_00018186 mRNA downstream 460702 25576809 ~ 25584888 (-) False XLOC_009252
TCONS_00018185 mRNA downstream 473725 25556922 ~ 25571865 (-) True XLOC_009251
TCONS_00018202 mRNA upstream 409327 26498339 ~ 26538989 (-) True XLOC_009262
TCONS_00018203 mRNA upstream 451969 26540981 ~ 26549693 (-) False XLOC_009263
TCONS_00018204 mRNA upstream 452007 26541019 ~ 26552393 (-) False XLOC_009263
TCONS_00018205 mRNA upstream 460153 26549165 ~ 26552652 (-) True XLOC_009263
TCONS_00018206 mRNA upstream 463936 26552948 ~ 26570948 (-) False XLOC_009264
TCONS_00018197 other downstream 50495 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018188 other downstream 460728 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018187 other downstream 466090 25578188 ~ 25579500 (-) False XLOC_009252
TCONS_00018173 other downstream 761545 25278845 ~ 25284045 (-) True XLOC_009245
TCONS_00018169 other downstream 776949 25238489 ~ 25268641 (-) False XLOC_009244
TCONS_00018200 other upstream 185628 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018201 other upstream 209617 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018239 other upstream 1557407 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018240 other upstream 1565164 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018243 other upstream 1833966 27922978 ~ 27923093 (-) True XLOC_009281

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_01724644_01730223.mRNA True 1480 mRNA 0.38 5 CI01000072 1724452 ~ 1731160 (+)