RNA id: TCONS_00018827


Basic Information

Item Value
RNA id TCONS_00018827
length 240
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id XLOC_009258
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 26117194 ~ 26183974 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCACTCCGGCACAAGGAAATCTGGACCCATCTGGTTGATTTGACTTGTGTGATTGCTCTGCCACATGCCCAGGTGCAGTTTGCTAAGCCATGGCCTGCCTAACTTGAAGAGGCTCTCTCTGGCTCCAGCAAAGGGCTATTCCTGCGTCCTGCAGTCTGCTGTCATCGGCCGGATATCTTCATGTCAGAGACAGGGTGGGAAGGGAGGAGGACCATGTCTCAGGTGGACTGGACTGGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019169 lncRNA downstream 241074 25764525 ~ 25876120 (-) True XLOC_009254
TCONS_00019164 lncRNA downstream 241080 25698812 ~ 25876114 (-) False XLOC_009254
TCONS_00019168 lncRNA downstream 241081 25764525 ~ 25876113 (-) False XLOC_009254
TCONS_00019166 lncRNA downstream 241113 25731453 ~ 25876081 (-) False XLOC_009254
TCONS_00019167 lncRNA downstream 356531 25738920 ~ 25760663 (-) False XLOC_009254
TCONS_00019170 lncRNA upstream 287362 26471336 ~ 26496219 (-) True XLOC_009261
TCONS_00018828 lncRNA upstream 460385 26644359 ~ 26647276 (-) True XLOC_009266
TCONS_00018216 lncRNA upstream 808135 26992109 ~ 26994461 (-) True XLOC_009270
TCONS_00018218 lncRNA upstream 1119305 27303279 ~ 27305901 (-) False XLOC_009271
TCONS_00018220 lncRNA upstream 1119305 27303279 ~ 27305916 (-) False XLOC_009271
TCONS_00018196 mRNA downstream 28130 25910501 ~ 26089064 (-) False XLOC_009255
TCONS_00018198 mRNA downstream 28182 26045590 ~ 26089012 (-) True XLOC_009255
TCONS_00018189 mRNA downstream 488148 25588357 ~ 25629046 (-) False XLOC_009253
TCONS_00018191 mRNA downstream 504080 25595646 ~ 25613114 (-) False XLOC_009253
TCONS_00018190 mRNA downstream 504080 25595646 ~ 25613114 (-) True XLOC_009253
TCONS_00018202 mRNA upstream 314365 26498339 ~ 26538989 (-) True XLOC_009262
TCONS_00018203 mRNA upstream 357007 26540981 ~ 26549693 (-) False XLOC_009263
TCONS_00018204 mRNA upstream 357045 26541019 ~ 26552393 (-) False XLOC_009263
TCONS_00018205 mRNA upstream 365191 26549165 ~ 26552652 (-) True XLOC_009263
TCONS_00018206 mRNA upstream 368974 26552948 ~ 26570948 (-) False XLOC_009264
TCONS_00018199 other downstream 41714 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018197 other downstream 122099 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018188 other downstream 532332 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018187 other downstream 537694 25578188 ~ 25579500 (-) False XLOC_009252
TCONS_00018173 other downstream 833149 25278845 ~ 25284045 (-) True XLOC_009245
TCONS_00018200 other upstream 90666 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018201 other upstream 114655 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018239 other upstream 1462445 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018240 other upstream 1470202 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018243 other upstream 1739004 27922978 ~ 27923093 (-) True XLOC_009281

Expression Profile

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