RNA id: TCONS_00018206


Basic Information

Item Value
RNA id TCONS_00018206
length 8249
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_009264
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 26552948 ~ 26570948 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACGCACACCGAGATGAGAGTCACGTGAGGCTCTGAACTCAACACCATGGCTTCTCAAGACAACAAAATATTCTCGACTTCTTAGGAAATTATTGTGCTGTTATGGTAGTTCATAAAGCACTGGAAATACATTTGATACATGCCGCGAACCTGGAACTGGGCACCGCGATGGCAGCTGTTCCAGTGATCAGTTGCTGACAAGCAGCAAACAGTGCAGAGCTTCTTATAGGAGCCCACAAGTGCCACATTCTGATTGACTGAGATACATCATGGAGTGGCTAGCACCAGCCTTGGAGAGGGACCTGGGTATTGATCAGCGGCAGACTGCACATAGTCAGCGACCCAATGAGTTGGTGGTCCTGGTTCCAACCCGCTGGGTAATGGCCTTGAGAAACAAGAGAGTTACTCGCTGTGCAAAATATGAGAGCTTCAGTGAGGGGGAAATCTGCACACTTCTCCAGCGCTCTCAAATGAAACTGCCATCTGGCTGGACACGTGTTTGCATCCAAGGTCTTCGAAAGCGTAAACTCGGATACCGTTTCGCCAGGGAAACTGGCTGCCATGGGGAGGGACTCTCCCAGGACTCTTTCATGACTCTCATGCAGGGAGTATCACAGTCTAATTTCAGAAATCTGTGGCATGAAGCGTACATGACTCATGTGCAGCCATATGCAGATTCCGTTGAGCAGACACCTGTTTTGGCCTTAGATGCTGTTCGTCAAGCCCTGCAGAAACTGTTTTGCTCCAACTTTATCTCTACTGATCGAGTGTCGCCATCCCTATCTCCAgctaaagagaaagaaaaagactGCCCATTCCTATCCACCTGCTCAGCTCCCAAACAAAGTACAGAGAGTTTATGTCCTAATGTGCTACCCGCAGAATGCTTGTTGGAGTCGGAGGAGGTCCTTTATGTGGTTTTCCCATACACACAATACACTGTTCATGATATCGTCACTTACAGTCCAGCTAAGCTTGCTAACAGCAATGCGaaaatattgttcattttgtaCCAGTTACTAATTGCAATGCGGGAATGTCATGCCTCAGGGCTGTTGTGTGGTGAACTCTCCTTACTTGATATTGCAGTTGATGAGCAGCTCTGTAGTCGCCTAAAGATCTCACTTGCACACTATGAAAAGTTTAAGGAGTATAGGGATGCTGTTCCATATGCTTTACAAAATAAAGTGCCAATGAGTGTTTCAACAAAGGACAATCACAATAATGGTGTGAGTGGACAGCTTTGTCGAAATTGTCAGGATGAACTTAAATCTCTGGTCCTAGACTGGGTCAACGGTCAGGTCAGCAACTTCCAGTATCTGATGGAGTTAAATCGACTAGCTGGGAGGCGTGAAGGAGACCCAAACTATCACCCTGTTTTACCTTGGGTGGTTGATTTTACTGTGCCATATGGAAGGTTTCGTGATCTTAAGAAGTCAAAATTTCGTCTAAATAAGGGTGATAAACAACTTGACTTCACGTACGAAATGACCAAAGAAGCACTGGCAGCAGTTAGCGGAAGTGGTGGAAGTAATTATCCTCCAGATCTTGGTGGACCAGTGGTACCTGGTGGTCCAGGCCAGTCGGATCACCTTCATGTTCCCCACCATATCTCAGATGTTTTGTCTGACATCACCTATTATGTCTACAAAGCTAGACAGACACCCAAATCTGTGCTATGCAGCCATGTTCGTTCCCAGTGGGAGCCCAATGAATATCCAGCTAGTATGGAACGTATTCAGAGTTGGACCCCAGATGAATGCATCCCAGAATTCTACAGGGATCCCTCAATTTTTCGCTCCATACACCCAGATATGCCAGACCTTGATGTACCTCCATGGTGCAATTCTTACGAAGAGTTTATTGCTGTGCATAGACAGCTGCTAGAGAGTCGAGAAGTGTCTCAGCAGTTGCATCACTGGATTGACCTAACGTTTGGCTATAAACTTTCGGGTAAAGAAGCCATTAAAGCTAAGAATGTCTGCCTGCACTTGGTAGATAACCACACTCATCTCACCAGCTACGGAGTGGTGCAACTGTTTGACCACCCCCACCCACCTCGTCTTGCCCTTTACCAGTATGCACCTCCAGAACCTCCTCACTTTGGACGTGTCAATGTTACAACATGGCAGATTCCACCCCTTGAAACCACAATGGACGGCGTGGATGGATTAGTCCCAGAGGCAACAGGGTGTGAATCTAGTGGCTGGTCAGTAGTAGGCCGGGATGAAGAGCTTGAGCAAGCAATAGAAGCTCTGGACTTAAGTGGCTCGTCATCATCTACTTCTGCTTCTGTTTCAATCCCTGTGGTTGGATCTGCTGCTGGAAAGACCAGTGGGGAGACTATTGGTTTGGTTGTGTCTCCATCGCATGGTTCTTTTCCTGGTGAAGCAACTGGAAATGTCACAAACACTCTAGGATCAGGCATTAGAACTGCCATGCTTCACAGAGCAGCATCTGTTAGTAAAAAGCCAGAAGCCTCTAATTTGGAAGACTTCAAAATAAGCCTGCCAGATGGATTTAAACCTTTGCAACCTTTGGAGGAGTTAGAAAAGCTCAACACATTTTTGGTGAAAGGTCTACACTCCGAAATCGAGCACACAATGGATCTTGgtataaacaaaaaagacttgaGATCTGTACCAAAAGTTCCTCTCTCATTCACAGATCTTTTCCAGAGAGATATGCAAGCCTTGGGTGTTCTCATCGCTGAAATCTTTTATTCCTCCAAACTGCGGGGATTGAGGCCAGAAACACATCTGAGGGATCGCTTTCAAGCAGTATTAAAGCTGTGCTCCACAAACCTTCGAGATGTTCCACTACCACTCCATCATGCACTGGACACTCTTCTGCAGGTCCACAAGCATTGTTTAAAGACAGAGACAATCATAATGCATCCTCAAGGACTGCCGTTTCTGTTTAAATATGACCCCATTTGTGAGGGACTTCCACCACCGAACCCTTGGCAACTGCTTAGTCCCATTGTTTCCCCTCTACCATTCCCAGAATACTTCCCAACATTGCATAAATTCATATTTTCCTACCACTCCAAGATGGAATCCATTAACAACATTCAGGGCCGTGACATTGTGTTCAACTTATGGCAGCAACTGGAGACACTTCTAAAGGGTGACATAACTACAGAGGGGCTTGAGATCCTTTTACCCTTTGTTCTTTCTTTGATGTCAGAGGAGTCCACTGCTGTTTATGCGGCCTGGTATTTGTTCGAGCCTGTGTCCAGGGTTCTTGGACCTCGCAATGCCTCTAAATACCTAATAAAGCCTTTGGTAGGTGTGTACGAGAATCCCAGATGCCTTCGAGGCCGCTTCTACCTCTACACAGATTGTTTTGTGCTGCAGCTTATTGTAAGGCTTGGTTTGCAGGTCTTTCTTTCCAGTCTTCTTCCACATGTTCTGCAGGTTATGACTGGCTTTGAAAGCTGCAACACAGCTGCGGGGACAGAATGGGAGGGCATGAAAGTTTTAAGGGGAGCTGCTGGTGCCTTagatgaggaagaggaggaataTGAGTGTGACGATCGAAGATCATCTAATGCCACATCTTCTGGCAAAGTAGGAGGAGGTAGTGGAGGTGGTAGTGGGGGCGTTGGTGTTGTCGGAGACCAAGGACTTGTTGATTACTCATCAGGCATCAGTCTCAATGATCAGGTTTTTCTGAATGAAGGTGAGGACTTCCAAAACGGCTTTTATGTGAATAATAGTGCATCTGGAGCAACAACAGTTGGCACCAAACAGCAGAACCAAAGCACAGCAAACAAGGACCAAGACCAAGAATCTCTCAGCGTTGGGAAACTTAGTGACAAGAGCAGTGCCAGTGAAGTGTCCATTGGAGACCGTGCAAGTTTAAAATCTGCTGATAGCAGTCAGGACCTGAAGCAAGCCAGTGATGGTGAGGATGGTGGAGAGCTTGAGGATGAAGAGGAGACAGTGGAAGACAGAGAAATTACAGTACAAAGGGTGCCAAGTCTGGAAATGACTCTTTCAGTCTGTACTGAGGAATCAGAAGCAACTGTGGCAACTCTTGAGGGAGATGTCATGAATGGAATTGTTCAAGAAGATGGAGAGAAAAAcatggaggaagaagaaactgaacATGACCCTTTAGAGGACTCTGAGGAAAAAGAACACAAGATACTATTAGACACTGTTTGCAAAACTGTCAGATGGTTGTCTGCAAAACTTGGGCCAACACTAACATCTCGATTTATAGCTAGGAACCTGCTGCGACTGCTTACATCATGTTACATAGgTCTCGACAAACATCAATTCATGCTCTCTGTGAATGAAGAAAATAGCCTTGAGTGTGTAGGAAGTGTTTATGAGAAGAAGCCAGTTGTTGGAGACCAGACTGCAAGACCAGTTCTTGAGTGTCTTATTTACATAGCACATCTCTACGGAGAACCAGTGTTGACGTATCAATATCTACCCTATATTGGCTACCTGGTGTCTCCACCTTCCTCATGCCGTTTGAACACTCGAAAGGAGGCCGGGCTTTTGGGTGCTGTGGTACTCACACAGAAGATTATAGTCTTCTTGTCAGACACCACTCTAATGGACATGCTGATGAAGATTAACCAGGAGGTTCTGCTGCCACTGCTAGATTTGTTAACATCAACTAAGATGGGCTTTCCTAGTGGAGTGCAAACTCGTTCTGCAGTGTGTCTGAAGACTCTAAGTCTCATGGCACTGATCTGTCTGCGCATTGGCAGAGAGATGGTACAGCAGCACATGGCAGAAACTCTCTCCAGGTTCTTCCAGGTTTTCTCCTTGCTGCAATTTTTGCAAAATCAGATTGGAAGTGCCCCACGTAGGGAGGTTGCAGAGTGCACATACCTGGACTTGCGCATTCCAGATGGAGCAGAGCTTACTATTGAACTTGGAGTTTTGGAGGAACTTCAGGCAGTATTTAATCCAGAAATGGCTTATGCATCTTACATTCCTTTCTACTGTCTCATTGgtgaTTCAGGAATTCGCAAACTTGTTACAAATCATGAGCTAGTTTGGAGTCTGGCTCAGTCTTACCACGAACGAGCAAGTCCTGGTAGCCCAGAATCCAACCCAGTTGGTGGTCAGAGAGCCTCTGCTGTGGGCCTTTCTCCTAGTATGGGCCGCCAGATGAGTCGCAGTCCCTTTCCTGCTCCTTCATCCACTTCCACACCACTAGGTGGAGACATATTACCTGAGTCGGGAACATTTGGCAGTCATCTGGTAGGAAACCGCATCCAGGTAACTAGAGACACTGAAGCCTGTGGAAGTCCTAACTTGTCCTCTTTGGAAACGTGGACACATGGACGACCTTATGGTAGCAATGCACCTCCAATGAGTCTAGCCACCACTGCACTTTCTTCAGCTGGACCTTCTTTTTCACATTCGTCATACTCCTGGGTAATGGGACCCACTCCAGAGGACAGTGCACTAAAACAGGACCTTCCACGTAGCAGCCGCTCACTGCAGGGCAACTGGCTTGCATACTGGCAGTATGAGATTGGGCTTAACCAGCAGGACTCCCACTTCCACTTCCACCAGATCCGTCTCCAAAGTTTTATTGGTCATTCGGGTACAGCAAAATGTCTGGCACCCCTAGCAGGGGAGGACTACTTCTTGTCTGGGAGTAAAGACAAAACTGTTAGGCTGTGGCCACTTTATAACCACGGTGATGGCACACGAGAGGTTGAACCACGACTCACTTATACAGAGCACCGCAAATCTATCTTTTATGTTGGTCAGTTAGAGGCTTTACAGGAGGTGGTGAGCTGTGATGGGACTGTGCATCTGTGGGATCAGTTCACAGGTAAGAATATTCGCTGTAATGAACCTCTGGACGGGAAGAACCCCATCACGGCCGTCACCACAATGCCTGCTCCTCACTGCAGTGTGGTGTTTGCTAGCGCTGATTCAGTGCTGCGTTTCATAGACCCACGCAAACCAGGCCTGCAGCATGAGTTCCGTCTAGCGTACAGTAACTTGAGTGCAGGGTTAATCCGCTGTCTGGCTGTTAGTCCAGGAGGACGCACCATTGCTGCAGGATTTTCCACTGGTTTTATAGTCCTGCTGGATGCAAGAACCGGTCTGGTGCTGAGGGGCTGGCCTGGTCACGAGGGAGATATACTACAAATGAAAGCAGCAGAGGGGAATCTGCTGGTCAGCTCTTCATCTGACCACACACTGACCGTTTGGAAAGATGTGGAGCACAAGCCACTCCACCAGTACAGGACTCCATCCGACCCCATCCATGCATTTGATCTTTACGGTGCGGAGATCGTGGCGGGTACTGTTGCCAACAAAATCGGAGTGTACTCCATTCTGGACAGCACAGCCAGCCTAGCAGGATCCACAAAACTCAGCACGGAGAACTTTCGTGGGACCCTCACAAGTCTGTCTGTCTTGCCCACCAAGAGGTTACTGCTGCTCGGCTCTGACAACGGTGCCATCAGGCTGCTGGCTTAAACAAACTACTGTTACCTTTTCACAAAACAATATTCCTTGTGCCACTTCTGGCTCCTTCCCCAGAATGAAACGATCTTGCCAACCATGCACAGACACCCGTTTCAGTCACAGAAGGAGCAAGCctgatatttacattttaaccTCGCTGAAAGAGAACTTACAACCTCCGCGCTCTTTAGTAAGtgaccaaaactgaaaattgccTCTGATTCATACAATCAAAAGAATagtcttttttaaaaaatgatttttagGGTTCATGTTCTATAAACTAGCTGCTTTGTATGTATTATTTGACTCTTCAGAAAGGATGGATTCTTAGACGCATGCTTGAGATGAGCTGCTCAGGAAAGTTGGTTCTAGTGTAGCGTTTACACTTCTTTCCATCAGACAAGTGACATCACCAAAAACATCACTGTGAGAATCACAGATTTAGATTTTGTTGATCATATCATATGATTCCATTCACCAGACTTGCTCAGCAACTATGCAGTATTCATGGTAGATGTTTATAGTGCACAATAtatggtagtttttttttttcaatactacTCTGTATGTTTCTGTATCCACGTCAATGGAGCGTAATGAACAAGACAAATGTGATCAAATGATGACTCTTCATTCTGTTACTTTACACTGAATGAGAGTGTAAGCACTCAATATGCAATGGGATGGTCCTGAATACTGAATTTGGACcttttgacatttaaattatGTCTGTTGATTATATAGATCAGCTTGATGTAGTAATTGATTTGATTTTCACATCAACCCCAGGTCAAGTGACATGTTACATTTTTTACGCACACCAtactgtgtgtatgtttgtatatacatacacatttataaatatatatatatatgtatatctacgTTGAATCCAATGCTTACTATCTAAAAGAATACTTTTATGCAACATCCATGAAAAGATAGGAggtatttaatttattactgGAATGCTTTATGTAAAACATTATTATCTCCAGACATTCCAATTCTATAATGTTgagaatacactgcaaaaaatgcttttcttgcttagattttttgtctagttttgagtccaaatatctaaaaattcttaaatcaagaagaatttttagatatttggactcaaaactagacaaaaaatctaagcaagaaaagcatttttttgcagtgtatgtagTGAAAATTATTCAGAAtgctaaaatatacatttatggtTCGCTAATTCCCTCAATTTATAAGGTATGAAGATTTGGCTGATGAGTTTTCAGTTACAAATTTAGGTAACAATAGGGTTTTATTTACCGAACGTACATTGAACAATGCTTCTGTATTTACTAATACATATTTAAGTCAAGTAAACAATAGTTTATGCACTGAACTAACATGAACTGAAACATTAACAAATGGTAATATATgcagtatataaaaaaagattgtTAGTTTATGTTACTTACTGCATTAACTACAAATGAGTTCTTACCGTAACTGTAAGTTTTCATTTTGGAAAGcacattttatgttcctaaaagCTTTCCACAAATCCTTTACGGATAGAGAAATTGGACAGTTGTGTATCGTTTCATATCCAAGTCCTTAAACACACTTAAAATGCAGCTTCATGATTTTGATAATTCATGCTATTGATCATGTCCGTTTGAGACTGACCAACACATTAGCCATTGCCCTTTTGTATTTCAttgcaagtattttttttttacttttaaactggGACCCTTTTCTATATACTCACCTTTTCAATGAtttcaagtaaaataaattaaacctaA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0035973 aggrephagy biological_process
GO:0045022 early endosome to late endosome transport biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005768 endosome cellular_component
GO:0005829 cytosol cellular_component
GO:0031313 extrinsic component of endosome membrane cellular_component
GO:0000421 autophagosome membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0035014 phosphatidylinositol 3-kinase regulator activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-030131-3389 Predicted to enable phosphatidylinositol 3-kinase regulator activity. Predicted to be involved in several processes, including aggrephagy; early endosome to late endosome transport; and regulation of phosphatidylinositol 3-kinase activity. Predicted to be located in bounding membrane of organelle and cytosol. Predicted to be extrinsic component of endosome membrane. Is expressed in several structures, including heart; liver; nervous system; optic vesicle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in cerebellar ataxia, mental retardation and dysequlibrium syndrome and hydrocephalus. Orthologous to human WDR81 (WD repeat domain 81).

Ensembl:

ensembl_id ENSDART00000156621

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019170 lncRNA downstream 56729 26471336 ~ 26496219 (-) True XLOC_009261
TCONS_00018827 lncRNA downstream 368974 26117194 ~ 26183974 (-) True XLOC_009258
TCONS_00019169 lncRNA downstream 676828 25764525 ~ 25876120 (-) True XLOC_009254
TCONS_00019168 lncRNA downstream 676835 25764525 ~ 25876113 (-) False XLOC_009254
TCONS_00019167 lncRNA downstream 792285 25738920 ~ 25760663 (-) False XLOC_009254
TCONS_00018828 lncRNA upstream 73411 26644359 ~ 26647276 (-) True XLOC_009266
TCONS_00018216 lncRNA upstream 421161 26992109 ~ 26994461 (-) True XLOC_009270
TCONS_00018218 lncRNA upstream 732331 27303279 ~ 27305901 (-) False XLOC_009271
TCONS_00018220 lncRNA upstream 732331 27303279 ~ 27305916 (-) False XLOC_009271
TCONS_00018217 lncRNA upstream 732331 27303279 ~ 27306012 (-) False XLOC_009271
TCONS_00018205 mRNA downstream 296 26549165 ~ 26552652 (-) True XLOC_009263
TCONS_00018204 mRNA downstream 555 26541019 ~ 26552393 (-) False XLOC_009263
TCONS_00018203 mRNA downstream 3255 26540981 ~ 26549693 (-) False XLOC_009263
TCONS_00018202 mRNA downstream 13959 26498339 ~ 26538989 (-) True XLOC_009262
TCONS_00018196 mRNA downstream 463884 25910501 ~ 26089064 (-) False XLOC_009255
TCONS_00018208 mRNA upstream 45056 26616004 ~ 26636826 (-) True XLOC_009265
TCONS_00018209 mRNA upstream 107886 26678834 ~ 26844591 (-) False XLOC_009267
TCONS_00018210 mRNA upstream 112597 26683545 ~ 26686908 (-) True XLOC_009267
TCONS_00018211 mRNA upstream 277961 26848909 ~ 26887028 (-) True XLOC_009268
TCONS_00018213 mRNA upstream 332319 26903267 ~ 26930999 (-) False XLOC_009269
TCONS_00018201 other downstream 254201 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018200 other downstream 278191 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018199 other downstream 477468 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018197 other downstream 557853 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018188 other downstream 968086 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018239 other upstream 1075471 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018240 other upstream 1083228 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018243 other upstream 1352030 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018264 other upstream 1804565 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018276 other upstream 2163979 28734927 ~ 28735041 (-) True XLOC_009299

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_01391395_01404483.mRNA True 9528 mRNA 0.43 10 CI01000072 1389526 ~ 1406073 (+)