RNA id: TCONS_00018828


Basic Information

Item Value
RNA id TCONS_00018828
length 659
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id XLOC_009266
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 26644359 ~ 26647276 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACTTGGCACTTCTCTCATGTTTGCTGCAAAATTAGACGTTGTTGGCTTTTGGCTTGGACTtctcatttgtgtttgtgtgcagtccAGTTTTTTCATTGGAGTCATTTTTAAGTTCAACTGGGAGAGAGTGACCAAAGAGGCAGTGGAGCGTGCTGGAAGGAGTAAAATCTCTGCAATGACAGCTCCTGATAGTGTCACAGCGAGACACAGAGAGAATGGGGATGAGTACATGACTGTCAGCGCAGCCGATCCGACCGTGGAGCCAAACGCGACTGGTATCGAGGAAAAGCCTCCAGTTCTGCTGTCCACCTCTCAGCTGGTCCTCAGAAGGGGTTTGACCACACTTGCCGCTCTCCTCATCCTCGCTGGAGGGATAACCGTTCATCTCATTGTGCCCTTACCACAGATGTTTTACGGTGCTTCTGCAAATTTTACTTTAAACTCCAACTTTACCACACCttcatccttcattcattccACTTCTGCGTCATTATAAGCCTAGAGCTGTAGCTGATCATACTGTAGACTCTACTGCCCTACACTTAAACTGGCCCTCTTGGTAACCCAGCTACTgtcaaaaacatgtaaataataatgcaaatcaaTTTGATTTCAAAACCTTGATGCCCATTTGACcatcaaaatatttgaaaaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019170 lncRNA downstream 148140 26471336 ~ 26496219 (-) True XLOC_009261
TCONS_00018827 lncRNA downstream 460385 26117194 ~ 26183974 (-) True XLOC_009258
TCONS_00019169 lncRNA downstream 768239 25764525 ~ 25876120 (-) True XLOC_009254
TCONS_00019168 lncRNA downstream 768246 25764525 ~ 25876113 (-) False XLOC_009254
TCONS_00019167 lncRNA downstream 883696 25738920 ~ 25760663 (-) False XLOC_009254
TCONS_00018216 lncRNA upstream 344833 26992109 ~ 26994461 (-) True XLOC_009270
TCONS_00018218 lncRNA upstream 656003 27303279 ~ 27305901 (-) False XLOC_009271
TCONS_00018220 lncRNA upstream 656003 27303279 ~ 27305916 (-) False XLOC_009271
TCONS_00018217 lncRNA upstream 656003 27303279 ~ 27306012 (-) False XLOC_009271
TCONS_00018221 lncRNA upstream 656003 27303279 ~ 27306635 (-) False XLOC_009271
TCONS_00018208 mRNA downstream 7533 26616004 ~ 26636826 (-) True XLOC_009265
TCONS_00018206 mRNA downstream 73411 26552948 ~ 26570948 (-) False XLOC_009264
TCONS_00018207 mRNA downstream 76081 26554729 ~ 26568278 (-) True XLOC_009264
TCONS_00018205 mRNA downstream 91707 26549165 ~ 26552652 (-) True XLOC_009263
TCONS_00018204 mRNA downstream 91966 26541019 ~ 26552393 (-) False XLOC_009263
TCONS_00018209 mRNA upstream 31558 26678834 ~ 26844591 (-) False XLOC_009267
TCONS_00018210 mRNA upstream 36269 26683545 ~ 26686908 (-) True XLOC_009267
TCONS_00018211 mRNA upstream 201633 26848909 ~ 26887028 (-) True XLOC_009268
TCONS_00018213 mRNA upstream 255991 26903267 ~ 26930999 (-) False XLOC_009269
TCONS_00018212 mRNA upstream 255991 26903267 ~ 26930999 (-) False XLOC_009269
TCONS_00018201 other downstream 345612 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018200 other downstream 369602 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018199 other downstream 568879 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018197 other downstream 649264 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018188 other downstream 1059497 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018239 other upstream 999143 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018240 other upstream 1006900 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018243 other upstream 1275702 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018264 other upstream 1728237 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018276 other upstream 2087651 28734927 ~ 28735041 (-) True XLOC_009299

Expression Profile

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