RNA id: TCONS_00018209


Basic Information

Item Value
RNA id TCONS_00018209
length 4859
RNA type mRNA
GC content 0.48
exon number 20
gene id XLOC_009267
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 26678834 ~ 26844591 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCGTTTTCGTTCCAAAATGGCACGTCTTGCGTGAAATCAACAAATCGGTCATCGatttaatgtatttttctgttttgtttactTAGTTAGCTTCTCTGACTTTAAAAATCACACCCTAGTTGACACAGTACTAATACAATGATGATCATAGGCAACTTTATTTTAACTTGTGTTTAGTTCTGGGACTGCAAAAATGATTTTACCTgtcaataaaatgtcatttatatcCTTAAGGAGGCGCTAGTGTAATATTTTTAAGtacaaaactgaataaataagtaTCTAATAGATGACAGCGGGTGGTCTGGAGTCTGCATGAATACGCTTGGCGTTTTCCAAGTTGACTGCAGCTCGCGCAGAGCCACTGGAGGCAGTCGAACATCACATCTCGAGCTCAACAGGAGAAGACAACAGCAAAgtctgcacacatacaaacagccCCAAGTCCGCGCGTACTTCAACACGAGGATTTCTCTCCGCGTTCATGGATACTCCCACATTCACATGTCATCTCCACAGCATCTTCAGCCATGAAACGCGCGTAGACTTTAAATCGCTTCTCCCGCGCGCAGACAAGGACAGAGAGAAGAGACGTGCGTACTGTCCAAACTAACTGCAAAGACGCAGGATGGCTAAAGAGACCAGAGGGAAAGCGAACCTCCGCAAGCACAGTGCTTCTCACTGGCGCATGCAGAACATCGCACAGGAATCTGTTGACAGCTCGGATGATGAGTTTTTTGATGCCAGAGAGGTGCTGGAGGGGAAGACGGCCATGCTTTTGGGGATGAGTCAGTGGAACTCTAATGATCTCGTTGAGCAGATTGAAACAATGGGACACATCGACCAAACACAGGAGAGTCTGTACCGTGTAAGGAGGACAAAATGTATCCCTCAGACTAGCATTGACGGCCTAGAGGAAGCTGAGAAATGTCAAACGCATGTGCTGGTGTTGGTGGTTCACGGGGGGAACATTCTGGACCCGGCGGGTGGAGAGCCTGGAGCAAAGACCACAGATGTAAACACGTTGTCTTCAGTCCTGGAGAAAGTATCTCAAGCTCATTTTCAAGCTGCAGCCCAGCATGTGGTCATTAAGTTGGTGCCATGCCCAGCCGTATGCGCAGAGGCCTTCTGTCTTGTGTCAAATCTGAACCCATACAGCTACGATGAGAGTTGTGTGTCAAGCAGCGTGGACCATCTACCTCTGGCCGCTTTACCGCTGCTCGCCATAGCTGCTCCACACTACCAAGATGCCGTCGCAACCGTGATCGCCCGAGCCAACCAGGTGTACCACAGATTTCTGCAGTCTCCAGAGGGACAGGGATTCACTGGCCAGGTGTGTTTGTTGGGTGACTGCGTGGGAGGTGTGCTGTGTTTCGACGCTCTCTGTTTCAGCAACAGCCCACGACACAGCAGCCCCATCCATAGCAGTCGACACAACAGCACAGAGAGCTTAAAGGATAACCCTGACGTCAGTCCGAGCCTGAGCTCCAGCAAACGCCTTAGCAGGAGCAACATCGACTTATCTGCGCCCAGCGAGACCCGCAACAGGAAAACTCCACTCAGCCGCAAACAGAGCGATTCGTATGATGGAGACTCTGGAGGTCAACACCATCCGTTCCTCAGCAGTCTGATACAGGACGGAGCAGACTTAAGACCAAACAGCAGCACCAGTTTAGTGCTAAATCCAGGACGCTTTGACTTTGAAGTGTCGGATTGTTTTCTGCTGGGTTGTCCTCTTGGATTGGTGCTGGCCATGAGACGCACTGTACTTCCTGCTGTCCAGGTGTCTCAGCTCCGGCCAGCATGTTCGCAGATCTTCAACCTGTTTTACCCCTCGGACCCATCGGCGTCCAGACTGGAGCCTTTGCTTCACTCCCAATTCCACAAACTGCCTCCGTTCCCGGTTCCCCGATACCAGCGCTACCCTTTGGGAGATGGACGCTCCAACCTTATCGCCGATGAAATCCCCAGCTACCCTGACGCATTCCTGCCTGGAAGTGTGGTTCCAGTGGGCGTCCTGCAGCCCTCGTCTCCGCAGACAGAGCGCACCGCAGGTGTACGGGTGGGTGGCGAGGTCCGCAGGTCCAGTTTGACCAGCATGGACAGTCAATCATCAGGCTGCCTGGAGAGCAGGCTGAGCAGCACCATTGCCAACATCTCCAGCAGCTGGTGGGGGTCTAAGCGGTTGGATTATGCTCTTTACTGCCCAGACGTCCTGACATCTTTCCCCACGGTGGCTCTGCCTCACCTGTTCCATGCGTCCTACTGGGAATCTACTGATGTTGTCGCCTTCCTTCTGCGACAGgtgatGCACTGCGATTATGTGAAAGCCCAAGAGATGGACAACTGTGACTCGGCCCCCTTCTCTCCTTCAAGTCCCAGAGAGAAGTGGCTCCGCAGACGTACACACGTCAAACTTAGGAACGTTACTGCAAACCATAGAGTTAATGATGTCATCGCAACTGAAGATGGCCACCAGACCCTGGTCGGTCGCTTCATGTATGGCCCGCTGGATATGGTGACCCTGACAGGGGAAAAGGTCGATGTGTACGTGATGACCCAGCCACAGTCAAGTCGCTGGGTGCACTTAGACACAGAGGTGACCAACAGCAGTGGCAGAGTGACCTACACCATCCCCAAAAGCAAAAAGCTAGCCGTGGGGGTGTACCCCATTAAAATGGTCGTCAAGGGCGACCAGACGAGCGGTGAGGCCTTCCTGACGGTTTTGCCTCGGGGGATGGAGTGTGTCGTCTTTAGCATCGACGGTTCATTCGCCGCCAGCGTCTCCATTATGGGCAGCGACCCCAAAGTACGGCCTGGAGCTGTGGATGTGGTCAGGCACTGGCAGGACCTGGGCTACCTGATCATATATATTACAGGCCGTCCAGACATGCAGAAGCAGAGGGTTGTGTCCTGGCTTTCTCAACACAACTTCCCCCAAGGGATGATCTTCTTCTCTGAAGGGCTTGTGCATGACCCACTTCGCCAGAAAACTATCTTCCTCAGGAACCTGATGCAAGAGTGTCACATTAAAATCAACTGCGCTTACGGCTCCATGAAGGACATTTCAGTCTACAGCATACTGGGCCTCAGCCCCAACCAGATATATATAGTGGGACGGCCCTCCAAGAAGTACCAGAATCAGTGCCAGTTCCTGAGTGAGGGCTATGCGGTTCACCTTTCCTCCCTGCAGTTCAGTCACAGAGCTCGTCCCAAGAAGAGCTCATCGGTGCGAATGGTGCTTCGAAAGGGCTCATTCGGTTTGTCGGCTAAACCAGACTTTCTGTGTAAGCGAACGCACCTTCGCCGCACCATGTCAGTACAACAGCCTGATCCACCCATGACTCCAAACCCTAAACCGGAGCGGGCACAGAGTCAACCTGAGACAGATAAAGACCATGGAGGTGGAGGGGGTCCAAGTCATGCCTTGTGGGCACGGGGGTCCATGCACCGTGGCGACACCACTCCCTGACCCATCAAAAACATTGAAGCAATGGAAAAAGACAGATCGGTGGACAGTGCCCAGCATCTTTACTCCTTCTGCTGATATCACACCATAGAAGATGAAAAAAAATCCCACCtgagctgtttaaaaaaaaaaaaaacacctcagtgAAGTGGATCTGATGCACAAACTCTGACCGtccaattttgtatttatttggcaGCAAGAGAACTCGGTCTCGCTTTAAAATTCAATTTCATCCATGTTTCATCCATCCGTGATGCTTTGAAAGGAGCGTCTGGATTTATTCAGCATTATGCGAAGGATTCCTGGCATCGGGCATCAAGGAAGAAAGAGGATATCTGATAAGATCCTCGGAGAACACATCAAATTTCCTCACGCCTAAGCAATACGGAGGAAGAAGGGAGTGCGAGCGTCCCGCTGCTCGGACAGGTGGCAGCGCTGACTCTTGCAATAATCCCTCTGTTTTAATATTGCAGGCATTTGTCTGCTCTCTGGGCGGCTGTCTATGGCCCGATTGTGGCCAGACGGACTTGCAAACTGTACATTAACCTTTTGTGGCAGTGTGGCGACCTGGCCTGAACTCTCGCCGCCTCTGTGTCCGTTCAGCCTCTCAGCCAGAACAGAGTCTGACAGCGATGGCCACTGCTGCTGAACTCAACGCCGCTGAAGCATATTTACAACCATGGCTGAATCTTCTTGTGCCTGTTTCTCACTCGTCTTGTAAATATACAGTAAGTGGCACTGAGGCAAACTGACTGTGTTTGGTGTAGTGGAGCATGGCAATAGCTGACTGCAGCAGTGTTTTCTTAATATTTTGGCCTTTCtggtataaatatttaaacattctgAACATGATGAATTCACCTTGTTTGAAAGTTTATTTGGGTAAAAATAAGCAAATTGGCAATTAATAAAtgaagtaatttaataaatattgaatTTATAATATACTTATAAAACCTGCAATAGGGATTAGCAAAATAAGTCATCTTTTTCTAATAATATTATAgtgtttgttatgtttattagGCAGAATTTTAggcaattattaattaaattcaaaatagaAATGAAAATAGAGACTTAGAAAACcataaactgttattttaaactttctattcatcaaagtTGAGAGAAAATGTTCCCAAAGCATTAAGCAGCAGAAAATATCTCCTGTTTTCAACATccatattacatattattaaccttctttatttttttttattgcctatTGATCAGCAGATCAGTATTTTAGAATGATTCCAGGTGGGAAAAACTGAAGAAACTGCAGCTGAAAATTCTGCGTTGTCGtcacatgaataaattaatatatatatattaaccctTACGTACTGTTGTGGATGATTTCATCCACTCTGGAGTgattt

Function

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0061300 cerebellum vasculature development biological_process
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0005548 phospholipid transporter activity molecular_function
GO:0004620 phospholipase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9216 Predicted to enable phospholipase activity. Acts upstream of or within cerebellum vasculature development. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Used to study arteriovenous malformations of the brain. Human ortholog(s) of this gene implicated in cone-rod dystrophy 5. Orthologous to human PITPNM3 (PITPNM family member 3).

Ensembl:

ensembl_id ENSDART00000077582

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018828 lncRNA downstream 31558 26644359 ~ 26647276 (-) True XLOC_009266
TCONS_00019170 lncRNA downstream 182615 26471336 ~ 26496219 (-) True XLOC_009261
TCONS_00018827 lncRNA downstream 494860 26117194 ~ 26183974 (-) True XLOC_009258
TCONS_00019169 lncRNA downstream 802714 25764525 ~ 25876120 (-) True XLOC_009254
TCONS_00019168 lncRNA downstream 802721 25764525 ~ 25876113 (-) False XLOC_009254
TCONS_00018216 lncRNA upstream 147518 26992109 ~ 26994461 (-) True XLOC_009270
TCONS_00018218 lncRNA upstream 458688 27303279 ~ 27305901 (-) False XLOC_009271
TCONS_00018220 lncRNA upstream 458688 27303279 ~ 27305916 (-) False XLOC_009271
TCONS_00018217 lncRNA upstream 458688 27303279 ~ 27306012 (-) False XLOC_009271
TCONS_00018221 lncRNA upstream 458688 27303279 ~ 27306635 (-) False XLOC_009271
TCONS_00018208 mRNA downstream 42008 26616004 ~ 26636826 (-) True XLOC_009265
TCONS_00018206 mRNA downstream 107886 26552948 ~ 26570948 (-) False XLOC_009264
TCONS_00018207 mRNA downstream 110556 26554729 ~ 26568278 (-) True XLOC_009264
TCONS_00018205 mRNA downstream 126182 26549165 ~ 26552652 (-) True XLOC_009263
TCONS_00018204 mRNA downstream 126441 26541019 ~ 26552393 (-) False XLOC_009263
TCONS_00018211 mRNA upstream 4318 26848909 ~ 26887028 (-) True XLOC_009268
TCONS_00018213 mRNA upstream 58676 26903267 ~ 26930999 (-) False XLOC_009269
TCONS_00018212 mRNA upstream 58676 26903267 ~ 26930999 (-) False XLOC_009269
TCONS_00018214 mRNA upstream 60044 26904635 ~ 26931541 (-) False XLOC_009269
TCONS_00018215 mRNA upstream 74631 26919222 ~ 26923993 (-) True XLOC_009269
TCONS_00018201 other downstream 380087 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018200 other downstream 404077 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018199 other downstream 603354 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018197 other downstream 683739 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018188 other downstream 1093972 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018239 other upstream 801828 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018240 other upstream 809585 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018243 other upstream 1078387 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018264 other upstream 1530922 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018276 other upstream 1890336 28734927 ~ 28735041 (-) True XLOC_009299

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_01272628_01318779.mRNA True 3356 mRNA 0.53 19 CI01000072 1272530 ~ 1319079 (+)
bowfin (Amia calva) AMCG00005798 True 1569 mRNA 0.63 10 CM030142.1 10043818 ~ 10052809 (+)