RNA id: TCONS_00018214


Basic Information

Item Value
RNA id TCONS_00018214
length 2862
RNA type mRNA
GC content 0.47
exon number 15
gene id XLOC_009269
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 26903267 ~ 26931541 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAGCGGAAGTACATTAAGTAATAGTCGGTCTTCGTTGATCGAGTGCACCTTACAAGTCACTTCAAGGGGTGCTGCGCTTACCAGAGGTTTAGGAGTTTCTCAAGATCATACCAGCAGCCATGTCAGCTGTGGTAGATCTAAAGACGAAGGAGGAGAAAGATGCGGAACTGGACAAAAGAATTGAAGCCCTGCGGAAGAAGAATGAGGCTTTGGTTAAGCGATATCAGGAAATACAGGAAGATAAGAAGAAGGCTGAACAGGAGGGCATCGCTGTGACAACAGCTCGCAAACCTCGCCCTCATGAGCATGAGTCTGAACGAAGAAAGACAGAGAAGGAGAATTTCACAGTAACAGTCGACTTATCCAAACCAGCTGGGGAGAAGCGTTTTACAAATGACAGAAAACCAGCTGGTCCTCGTGGAGATCCTGGGCCAGAAGAAGAGGAGCCTGGTCGGCCACATGGCGAGAGTCCCCCAAACAGAACCGGATCAGGCCGGCTAAGCAGAGGCGGCCAACGCAGGGAACGAAGAGAGCCTCGTCCAAACAAAGGCGAACCACGACCAGACAGGCAACCTCAGGATGGTGAAGTTGGAGAGAGTCCCGCTCATACTGAACGCTCCTCTAGAGGAGGACGAAGAGGAGgaagaggtggaggaggaggtggaggcgGAATGCAAGCAGGACCTGGCTCAGATAGAAAGTCAAAGGAGTGGGAGGAGAAAAGAAGACAGAAcatagagaaaatgaatgaggagATGGAAAAGATTGCTGAATATGAGAGAGGTCAAAGGGCTGATGGAGAGAAGATTCCTATGAGGAACTTTCTTGATGACCCACGGCGCAGCGGACCCATCCCAGACACTGACCGCAAAGAGGGAAGCAGACGACACGTGCGCAACTGGGGTGGAGTTGACTTTGACAATGTGAAGACTGGTCCAGAAGTTGAGAAAGAATGGACGAATCGTAGGCCTGGTGGTAAAGGCTCAGTGGATATGACTCTGTCGATGACGGGTAGAGAAAGAGCCGAATATCTCCGCTGGAAAAAGGAAAGAGAGCAGATTGATGAAGAACGACTGGCTCGTCACCGTAACGCAACTGGACAATGGAGGCGAGAGTGGGACGCACAAAAAACTGATACGATGTTCAAGGAGGAATCAGCTGTGGCTGGTGAGAGCATGCAAGAACAAAGCAACAGGAGAgAAGACAATAAGAAGCCGCCCAAGACACCAACCTTCGGGGACTTCTTGGGGCAGGGCAAACCCAGACAGGCAGGAGGACGTGGGCGAGGAAAGGGCAAAAGCTACAGCATGCATGATAATCGGTGGGAAGGAGAAAATGAAGAGGAGAAAGGAAGAAAGGAGGAGCAAGAGAAGGAAAAGGACGAAGAGAAGGACAAAGAAAAGGAAAACGAAAATGAGGACAGCACCCTTAAGGCTCCATTGTCAGAGAAGAAAactgaagaagaagaggaagatgaGTGGGAGGATGCCAGCGATGGTGAAGAGGAAGATGTGGAAGAGGATGAAAAAGCAGATCACGAGGAAGACACGAAAGATGCTAAATCAAAAGAAAAGAGCATTTCCTCTGCTGCATCCTCTACTCCCAGCCCAAAAGGGCAACGTACCCCAAGACCCAAAGTCCACATCCCTTCTCCCAAGGAGATGCTCAGTACACCAGAGGCAGCAAAACCCCCTAGCCCTTTCTCCCCGCTGGACGGCCACCAGCCAGTGTCAGACTGGGGTGAAGAAATGGAGATGCTTTCTCCTAAGAGCAGTCTGGGCGAGAGCCCTCTGAGGCCCAGCAGCACCGAAAGCAGTCCTGCTCAAGCTAAGAGCAACCCGGCAGAGAAGGATGCTACTGACACACACAGCCATTCTGAAGAATCAGAAATAACACCTACTGTGGTGGATTCCACTTCCTGTGAAACAAAAAAGGAGTCTTTACGAGCTAAATCTCCCGACACTACCACCTCGAGCAGCCAAGAACCCATAGTTTCGCCCACCTCAGACAGCACCAGCCAGAGCAAGGAAATCGATGTCCCTAATGTTGAGCTGGACCAGAGTCAGTGTGAAACCAGTCCTGAAGAGGAAACATCAGTGGATTCTTCAGAGCAACCGTCCACAGGCTGAGGACTTAATGCGCAGACCAGAAGCGGAGAAAAGTGGAGACATCAGGTGTAATGGACGGCTGTTGACTGTAAATTAAAGGTTCGAGGGGAGTCCTTGGATCCTTGCCATCGCTTCATCCAAACTACTCagtgtattatttaattattcctCATTGGTTGGGACAGTGCTGTTGTCTAGCTATGCTGCTGCTGCTCTTTTCTCACGTTTACACTGGGATTAAGTAAAGCATGTTAAACTCAAGCCACAAAATTAGGTTTTTATGACGGAGCAATGCAAGTTCCTGTTCCCCAATGTTGTTTGAAACAACGTTTGGCGCATCATAAACATGATATCTGAGCtcagatttatattttaatgtcaaaagGCAATATATGAAGTTGTATTTATTGCTGAGAGTGGGATGCTTCACTTTTTTGCAGTCCCGTCATAAACTAgggcattactttttttttttttaactaaagaattctcacattacattttaatattatattcatgAGAATGAACTCCAAATTTTTAAGTTTAGCTTAGTCAATTGATGCCCTAGAAATAATGTGCACACTGACCAAAGATTATAAAATCATGGCAAAATTATGAGTTTGAATGAGAATGATGAAATGACTTGGGTGACAGATCATGCATACAATCAAGTCCAATTTTAGTTTTGACCTTTTATTTGTTGTTGCATCATGTTTAAGTACTGCATTTATCacaagtgtatttgtgtgttc

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-520 Orthologous to human CCDC9 (coiled-coil domain containing 9).

Ensembl:

ensembl_id ENSDART00000027563

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018828 lncRNA downstream 257359 26644359 ~ 26647276 (-) True XLOC_009266
TCONS_00019170 lncRNA downstream 408416 26471336 ~ 26496219 (-) True XLOC_009261
TCONS_00018827 lncRNA downstream 720661 26117194 ~ 26183974 (-) True XLOC_009258
TCONS_00019169 lncRNA downstream 1028515 25764525 ~ 25876120 (-) True XLOC_009254
TCONS_00019168 lncRNA downstream 1028522 25764525 ~ 25876113 (-) False XLOC_009254
TCONS_00018216 lncRNA upstream 60568 26992109 ~ 26994461 (-) True XLOC_009270
TCONS_00018218 lncRNA upstream 371738 27303279 ~ 27305901 (-) False XLOC_009271
TCONS_00018220 lncRNA upstream 371738 27303279 ~ 27305916 (-) False XLOC_009271
TCONS_00018217 lncRNA upstream 371738 27303279 ~ 27306012 (-) False XLOC_009271
TCONS_00018221 lncRNA upstream 371738 27303279 ~ 27306635 (-) False XLOC_009271
TCONS_00018211 mRNA downstream 17607 26848909 ~ 26887028 (-) True XLOC_009268
TCONS_00018209 mRNA downstream 60044 26678834 ~ 26844591 (-) False XLOC_009267
TCONS_00018210 mRNA downstream 217727 26683545 ~ 26686908 (-) True XLOC_009267
TCONS_00018208 mRNA downstream 267809 26616004 ~ 26636826 (-) True XLOC_009265
TCONS_00018207 mRNA downstream 336357 26554729 ~ 26568278 (-) True XLOC_009264
TCONS_00018231 mRNA upstream 484231 27415772 ~ 27522838 (-) False XLOC_009274
TCONS_00018230 mRNA upstream 484231 27415772 ~ 27522838 (-) False XLOC_009274
TCONS_00018232 mRNA upstream 485574 27417115 ~ 27522838 (-) False XLOC_009274
TCONS_00018233 mRNA upstream 487380 27418921 ~ 27522838 (-) False XLOC_009274
TCONS_00018234 mRNA upstream 505870 27437411 ~ 27522838 (-) False XLOC_009274
TCONS_00018201 other downstream 605888 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018200 other downstream 629878 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018199 other downstream 829155 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018197 other downstream 909540 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018188 other downstream 1319773 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018239 other upstream 714878 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018240 other upstream 722635 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018243 other upstream 991437 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018264 other upstream 1443972 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018276 other upstream 1803386 28734927 ~ 28735041 (-) True XLOC_009299

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU323539 True 779 lncRNA 0.53 4 CI01000072 1150899 ~ 1155840 (-)