RNA id: TCONS_00018225


Basic Information

Item Value
RNA id TCONS_00018225
length 471
lncRNA type antisense
GC content 0.44
exon number 5
gene id XLOC_009271
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 27303279 ~ 27307088 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATctcataggaactccaatcttcccaactgtgagagggccttgctccagtgactgtcaGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAGCAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGcaGAAGCAAAGACAACAAAAAGAAGAAGTGATATGGATGTCTTCGTCATATGGCATG

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0030182 neuron differentiation biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0050793 regulation of developmental process biological_process
GO:0048699 generation of neurons biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000156217

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018216 lncRNA downstream 309489 26992109 ~ 26994461 (-) True XLOC_009270
TCONS_00018828 lncRNA downstream 656674 26644359 ~ 26647276 (-) True XLOC_009266
TCONS_00019170 lncRNA downstream 807731 26471336 ~ 26496219 (-) True XLOC_009261
TCONS_00018827 lncRNA downstream 1119976 26117194 ~ 26183974 (-) True XLOC_009258
TCONS_00019169 lncRNA downstream 1427830 25764525 ~ 25876120 (-) True XLOC_009254
TCONS_00019174 lncRNA upstream 46673 27352522 ~ 27364490 (-) False XLOC_009272
TCONS_00018228 lncRNA upstream 49466 27355315 ~ 27364490 (-) False XLOC_009272
TCONS_00018229 lncRNA upstream 51510 27357359 ~ 27364157 (-) True XLOC_009272
TCONS_00019175 lncRNA upstream 85695 27391544 ~ 27414001 (-) False XLOC_009273
TCONS_00018829 lncRNA upstream 85708 27391557 ~ 27391907 (-) True XLOC_009273
TCONS_00018214 mRNA downstream 372409 26904635 ~ 26931541 (-) False XLOC_009269
TCONS_00018213 mRNA downstream 372951 26903267 ~ 26930999 (-) False XLOC_009269
TCONS_00018212 mRNA downstream 372951 26903267 ~ 26930999 (-) False XLOC_009269
TCONS_00018215 mRNA downstream 379957 26919222 ~ 26923993 (-) True XLOC_009269
TCONS_00018211 mRNA downstream 416922 26848909 ~ 26887028 (-) True XLOC_009268
TCONS_00018231 mRNA upstream 109923 27415772 ~ 27522838 (-) False XLOC_009274
TCONS_00018230 mRNA upstream 109923 27415772 ~ 27522838 (-) False XLOC_009274
TCONS_00018232 mRNA upstream 111266 27417115 ~ 27522838 (-) False XLOC_009274
TCONS_00018233 mRNA upstream 113072 27418921 ~ 27522838 (-) False XLOC_009274
TCONS_00018234 mRNA upstream 131562 27437411 ~ 27522838 (-) False XLOC_009274
TCONS_00018201 other downstream 1005203 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018200 other downstream 1029193 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018199 other downstream 1228470 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018197 other downstream 1308855 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018188 other downstream 1719088 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018239 other upstream 340570 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018240 other upstream 348327 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018243 other upstream 617129 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018264 other upstream 1069664 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018276 other upstream 1429078 28734927 ~ 28735041 (-) True XLOC_009299

Expression Profile

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