RNA id: TCONS_00019175


Basic Information

Item Value
RNA id TCONS_00019175
length 972
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id XLOC_009273
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 27391544 ~ 27414001 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATCACAAATAACACATCTGGAATTTTATAACACACTCAGGTTGGTCAAAATTTTGATTGTTGTTTATAaagaattattttaattagtctgtttgtttctttgtttgtttgttgtaattaAACATTTGATTTTTGTTCTCTACCAATTCAGTGTGACTTTATGAATTCAtcaagaaacaacaaaaaaaaggtaAAGTTAATTTAATGTGTGCAAACAACTTGAAATACGGAAGCCTTTAGTTATGTTGTATCGTCTCTCTTTTTTGTGTGAGATTTTTCAGCTTAAATTATATAGTGAGTAAATTCACCATTATATGTTCTCCTAACGTATCTCATTTTTCCTTCATTAGGAACACTGGGCTTAGCAGTGATATCCCCAACCACTTTGAATTTGACTTGTGGCTGCCTGCCCGCAGAAGCTGTTTCACATTGTCGACCTCTTAAGGATTTTTCAACTCAGCCAGTTTACTTTTGGTTCTCTGTTCTCTTAATGATCGTTCTTTAAGCTCCATCTGTTGACAGGAAACGTTTCTGATGTTGCGCTATACTAATTGAACAGATTTGGACAGTGATTTGTGCCAGACTCACATCTCAAACTTATCTTCCAGCTCATACTTTTTGTTGACCCTACAATTCAAAAATGGAGGAAAAGGATATACTGTAGGAGCCAATCCAAGACCTAAAGCATTCAGCGAATGGGTGGATGAAAATGGCGCTCTTCTTGCCTGCCTGCTTTGGTGATGATCATCTCGGTTCCAGCCTCGTGAAACTTCTTCCATAATTCCCTGTCATGAAGAACCACTTTGATGTTTTCAATGCTCTGAAGATACCCTACATGGCAAGAGCCATTGAAAGCATGCCACTGATTGCCTACCTGGTCAGGTTCATTGTTCTGGGGATTGCTGGGAGTTGTAGGCAGGCCCAGATGTGAGGAATCGCTGGCCAGCTCAGGACGCCCACCCGACTGGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019174 lncRNA downstream 27054 27352522 ~ 27364490 (-) False XLOC_009272
TCONS_00018228 lncRNA downstream 27054 27355315 ~ 27364490 (-) False XLOC_009272
TCONS_00018229 lncRNA downstream 27387 27357359 ~ 27364157 (-) True XLOC_009272
TCONS_00019173 lncRNA downstream 84456 27303688 ~ 27307088 (-) False XLOC_009271
TCONS_00018223 lncRNA downstream 84456 27303784 ~ 27307088 (-) False XLOC_009271
TCONS_00018238 lncRNA upstream 228232 27642233 ~ 27658419 (-) False XLOC_009275
TCONS_00019176 lncRNA upstream 242845 27656846 ~ 27658455 (-) True XLOC_009275
TCONS_00018830 lncRNA upstream 246244 27660245 ~ 27661117 (-) True XLOC_009278
TCONS_00019179 lncRNA upstream 370549 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00019178 lncRNA upstream 370549 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00018214 mRNA downstream 460003 26904635 ~ 26931541 (-) False XLOC_009269
TCONS_00018213 mRNA downstream 460545 26903267 ~ 26930999 (-) False XLOC_009269
TCONS_00018212 mRNA downstream 460545 26903267 ~ 26930999 (-) False XLOC_009269
TCONS_00018215 mRNA downstream 467551 26919222 ~ 26923993 (-) True XLOC_009269
TCONS_00018211 mRNA downstream 504516 26848909 ~ 26887028 (-) True XLOC_009268
TCONS_00018231 mRNA upstream 1771 27415772 ~ 27522838 (-) False XLOC_009274
TCONS_00018230 mRNA upstream 1771 27415772 ~ 27522838 (-) False XLOC_009274
TCONS_00018232 mRNA upstream 3114 27417115 ~ 27522838 (-) False XLOC_009274
TCONS_00018233 mRNA upstream 4920 27418921 ~ 27522838 (-) False XLOC_009274
TCONS_00018234 mRNA upstream 23410 27437411 ~ 27522838 (-) False XLOC_009274
TCONS_00018201 other downstream 1092797 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018200 other downstream 1116787 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018199 other downstream 1316064 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018197 other downstream 1396449 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018188 other downstream 1806682 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018239 other upstream 232418 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018240 other upstream 240175 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018243 other upstream 508977 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018264 other upstream 961512 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018276 other upstream 1320926 28734927 ~ 28735041 (-) True XLOC_009299

Expression Profile

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