RNA id: TCONS_00018829


Basic Information

Item Value
RNA id TCONS_00018829
length 269
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id XLOC_009273
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 27391544 ~ 27414001 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taaGCGAATGGGTGGATGAAAATGGCGCTCTTCTTGCCTGCCTGCTTTGGTGATGATCATCTCGGTTCCAGCCTCGTGAAACTTCTTCCATAATTCCCTGTCATGAAGAACCACTTTGATGTTTTCAATGCTCTGAAGATACCCTACATGGCAAGAGCCATTGAAAGCATGCCACTGATTGCCTACCTGGTCAGGTTCATTGTTCTGGGGATTGCTGGGAGTTGTAGGCAGGCCCAGATGTGAGGAATCGCTGGCCAGCTCAGGACGCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019174 lncRNA downstream 27067 27352522 ~ 27364490 (-) False XLOC_009272
TCONS_00018228 lncRNA downstream 27067 27355315 ~ 27364490 (-) False XLOC_009272
TCONS_00018229 lncRNA downstream 27400 27357359 ~ 27364157 (-) True XLOC_009272
TCONS_00018227 lncRNA downstream 84922 27305043 ~ 27306635 (-) True XLOC_009271
TCONS_00018225 lncRNA downstream 85708 27303950 ~ 27305849 (-) False XLOC_009271
TCONS_00018238 lncRNA upstream 250326 27642233 ~ 27658419 (-) False XLOC_009275
TCONS_00019176 lncRNA upstream 264939 27656846 ~ 27658455 (-) True XLOC_009275
TCONS_00018830 lncRNA upstream 268338 27660245 ~ 27661117 (-) True XLOC_009278
TCONS_00019179 lncRNA upstream 392643 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00019178 lncRNA upstream 392643 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00018214 mRNA downstream 460016 26904635 ~ 26931541 (-) False XLOC_009269
TCONS_00018213 mRNA downstream 460558 26903267 ~ 26930999 (-) False XLOC_009269
TCONS_00018212 mRNA downstream 460558 26903267 ~ 26930999 (-) False XLOC_009269
TCONS_00018215 mRNA downstream 467564 26919222 ~ 26923993 (-) True XLOC_009269
TCONS_00018211 mRNA downstream 504529 26848909 ~ 26887028 (-) True XLOC_009268
TCONS_00018231 mRNA upstream 23865 27415772 ~ 27522838 (-) False XLOC_009274
TCONS_00018230 mRNA upstream 23865 27415772 ~ 27522838 (-) False XLOC_009274
TCONS_00018232 mRNA upstream 25208 27417115 ~ 27522838 (-) False XLOC_009274
TCONS_00018233 mRNA upstream 27014 27418921 ~ 27522838 (-) False XLOC_009274
TCONS_00018234 mRNA upstream 45504 27437411 ~ 27522838 (-) False XLOC_009274
TCONS_00018201 other downstream 1092810 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018200 other downstream 1116800 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018199 other downstream 1316077 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018197 other downstream 1396462 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018188 other downstream 1806695 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018239 other upstream 254512 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018240 other upstream 262269 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018243 other upstream 531071 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018264 other upstream 983606 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018276 other upstream 1343020 28734927 ~ 28735041 (-) True XLOC_009299

Expression Profile

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