RNA id: TCONS_00018230


Basic Information

Item Value
RNA id TCONS_00018230
length 4294
RNA type mRNA
GC content 0.47
exon number 22
gene id XLOC_009274
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 27415772 ~ 27522838 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTTATTTTGCCTGTTGACGTCACATTGACGCACCGACGTCTTGTTTGTGATGCAGCGCGGGAGTTTCATTTTGTgcctcattttattttttgctaattttactctttcaaaaatgtaactttatttCCGCGGTTATTCATTTTATACTCATCTAACACTCTGACCTCCACTGGACACTGAAACCCACAGAATGGCAGCGACACCAGTGGAATATACCATAGGAGGGGTGAAAATAAACTTCCCCTGTAAAGCGTATCCCTCTCAGCTGGCCATGATGAACTCTATCATTCGTGGACTTAACAACGGGCAGCACTGTCTACTGGAGAGCCCCACTGGCAGTGGCAAGAGTCTTGCTTTGCTTTGTTCGGCCCTTGCATGGCAGCAAGCTCAGTTTGTTAAGGAGCAAGATGCAGGCACTGGATTTGCTGACTGTAAGAAATCAGAAGTGGTTACTCCATGTCAGTGTGCATGCCATAGCCGAAATGCACAGTCCACTTTCAACACCAGAGCATCCAGACCACCTACAGTTCATCTTACGTGTGAAGGTACTTCCGCTCAGCCTACAACCCCTCTCTCAAAAGGAGGCAAAAGTGACCAACATAAAAAGCCCAGTTTGTCCTCCCGTCTCTCTGAAAAACTTCAAGCCTCGCTTAACAATGGAGAGCATGATGATGATTTTAAGAATGACAGGAAGCGTATTCGTACACCAGGCACAGAGCAGAAGATCAGCAAGCGAAGATGTCTTGAGAAAGGAGTGATTTACATTGACGACGACGATGAAGAAGAGGAGAGTTTGGAGAGACCAGTGCCTGGGGCTCAGACTTGGACCATGGAATTGAACAACGGAGCCAGAGCTGACAGTTGCCAGTCGCAGCCGCAGTGTTGTTCCCCCGTGTCTTGTTCTCTCTGTCCTTGCGCCAACCTCAAAGCGGGGCAAAAAATGGCTGAAATGTCCAAGGACAATGAGAAAGACAAAGATGGAAGCGGGAAAAAAAAGATCCCAAAGATCTTCTTTGGCACTCGGACTCATAAGCAGATCACACAGATTGCTAGGGAGCTGAAACGAACGCTTTACTCCACCGTGCCCATGACGATACTGTCCAGTCGAGACCACACCTGTGTCCATCCTGAAGTGGTTCCTCATGCCAACCGCAACGAACGTTGCAAGGAGTTCCTGGAGGCCAAGAATGGTCGGTCATGCCGGTACTACCACAATGTCCATAAAATGCGTGATCAGAGCACTTTACAGTGGGTTCATGGTCTACACCAGGCCTGGGACATTGAAGAACTGGTGCGTCTTGGTGGTAAACTGCGGTCTTGTGCTTACTATGCAGCTCGGGAGCTCATGCAAGAGGCCTGCATTGTTTTCTGTCCATACAACTACTTGCTGGACCCCCTCATTCgtgaaagtATGGAAATCAATTTGAAGGAGCAGATTGTGGTGTTGGACGAAGCTCATAACATCGAGGACTGTGCCCGTGAGAGTGCTAGTTTCACCCTGAACCAAGCTCAGCTGTTGCTGGCACGTGATGAGATCGATGGAATGGTGACACACAACATTCGGCGTGATCAACACAGGCCTCTGTTGGCCTTCTGTTGCAGCCTCACCAATTGGGTGCAGGAAAGCTGTGGTGGCTTAGAGGAACGTGAATATGAGTCTTCCTGTAAGGTGTGGACGGGTGTGGAGGTTCTTGGCATCTTCCGTGGCCTTGGTATTACAGCAGACACCTTTCCTTTGCTGCAGAAAAACCTGGCAGCGGTGCTGGAGAAGGAGGAGCGAGTCGGGCTAGTGAACGGGAGAGAAGAGACTGTGCAGGTTCCCACCATCAGCTCCAACACTCAGTCAATGCTCAAAAGCCTCTTTATGGTGCTGGAATTTCTTTTCAGACAAAATTGCAGGTTTGCAGATGATTACCGTGTGGCCCTCCAGCAGAGCTACATGTGGACCACCCAGCAGGACCTGCCAGATGCGCAGGGCTTTTTTGCACGACCCCATCGTCGCCGACAAAGCAACCGCACCAAAACACTAGTGCACACACTAAGCTTTTGGTGCCTCAACCCTGCTGTGGCATTTTCAGATCTGAGCAGTACAGTGCGGAGTATCGTGCTCACTTCAGGAACCCTCTCTCCTATGGGCTCCTTTTCCTCAGAACTGGGCATCAAATTTTCCATCCAGCTGGAGGCCAATCATGTCATCAACAAGTCACAGGTCTGGGTTGGTACTATTGGTGCAGGGCCTCAGGGTCGTAAACTTTGCGCCACATTTCAGCATGCAGAGACATTTGCTTTCCAGGATGAAGTAGGAGCCTTGCTGTTGAAAGTGTGCCATACAGTGAGTCGAGGGGTCCTATGCTTCCTGCCATCTTACAAGatgttGGATAAACTGCGGGACCGATGGACGAACACGGGTCTGTGGGATAAGCTTGAGGAGTGCAAGACTGTGATTACCGAGCCCCGTGGTGGTGGCAAGGGTGACTTTGATGAGCTGTTGCAGACATACTATGAGGCAATTAGAGGAACGGCAGCCAAGGGTGAAAAAAGAGATGGAGCGCTCCTGGTAGCTGTTTGCAGAGGGAAGGTGAGCGAGGGCTTGGACTTCACAGATGACAATGCCAGAGCTGTGGTTACCATTGGTATCCCGTTCCCTAATATTAAGGATTTGCAGGTTGAACTGAAGATGAAATACAATGATAAGCATGCAAAGTCAAGAGGGCTCCTTCCTGGTGGGCGCTGGTATGAGATTCAAGCCTACCGAGCATTAAACCAAGCACTCGGAAGGTGTATTCGACATCGAAATGACTGGGGGGCACTTATACTCGTAGACGACCGGTTCAGGACAAAcccaaacaaatacatcacagGCCTGTCAAAGTGGGTGCGTCAGCTAGTGAGACACCATGACACCTTCACTGGCGCCATGCAGTCCCTGAAGTCCTTTTCTCAAGGCCAGCGGGGGGCAGTAGAGACCTTTGAAGAGCCACAATCTCAGGCTGCCCCTCAGTGCCCCAGTCCTTCCACTGTTTCCTCACCCCCTCTTGAGATAATCACCCCCTGCAAGCCCGCTGACCCTCAACCTCTACAGCTAAACTTGCACATTGAGGTGCAGACGGACAACTCTGAGAGCAGGGCTTCTAAGACAGGTGATCAAAAGAATATCCAGCATCCACCTAAGCCAAGCCGAGAACATAATGTCCAGAGAACGCCATTGTCTACAAACCATCTCTTCACCTCCACGCCAGTCAGTAGCCAGTTCAAGACTCCCATTTTTCAATCCGAGCAAAATGCAACTTCATTAAACAAGCAGCAAGCTCAGAAGGAAGTTATTCCTGTGACACCAAAACACCAAATAAATGGTGACCCTGACCAAAATGAGACTTCATTTGAACCTCAACTTGAGCAGATTTTTGTAATTCCAAACTTAAAGCAGAACACCAGTGTTACAGATCTTGAAGACACCAAAGAGGATGAGCAAAGTATCTTCTACAGTCCTGAGCTGTTCGAAGGGGGCGAGGAGGAGAAGGAAGAGGATATAGAAGTGGAAGAGAAATCTTCTCTTCAGGCGGAAGTCAAGAATCCCGCAGCTAATAGCACAGCCAGTGTTCTTTTAGAGGACCTGTTTGGTTCAGAGCAGGGCAGTACAGAGCAGACAGGTTTAAGCTGTAGCCCAGAATTTGAGAACTTTCCTGCCTCTCAAATTGACGCCAGCAGTAGTCGATCAAGTAGACTGTCCAGATCTAAGAAAAGATTCAGCACGACAGCAGCATCAGATGAGTCTCATTTGAAGCCAGTATGTTTACAATTGCCAGCAGAGGTGAGATCAGGAGCTGTGTTTCCTTCACACGGTCTGCTTGGTTTCATCAGCAGCCCAGTTATGCTCTAATCAACACTGCGGGACCCATTCAGAGGAATCAACTTAAATTCCCATTTaccttttaatgtcattttatatTTGATCATAAGAAGGTAATGCttttatgtatttactttgtTTCCCTCGATCCTGAGAAACTTTTTTATACAACTGATTTTTGTTATTTGTagttaaataaaatgacaaaaatcacATCACCTAGCACTTCTGCTTATCATTGAATTATAAATGTACATGAAAGTAGTTTAGCAGTTATTCTTATGCAAAgtggattttcactgacagctcaaatttagccttgttttaagccaagacgactatgtttagacgtctgttagacatcttttaaaaaacaaaaaatgctttttggGTATTTATAGGAACTAGCCaccaggaatttttttttttattttttattttt

Function

GO:

id name namespace
GO:1990918 double-strand break repair involved in meiotic recombination biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-081107-11 Predicted to enable DNA helicase activity. Predicted to be involved in double-strand break repair involved in meiotic recombination and nucleotide-excision repair. Predicted to act upstream of or within nucleobase-containing compound metabolic process. Predicted to be active in nucleus. Is expressed in central nervous system; lens; oral epithelium; and pectoral fin fold. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group J; breast cancer; colorectal cancer; and thrombocytopenia. Orthologous to human BRIP1 (BRCA1 interacting helicase 1).

Ensembl:

ensembl_id ENSDART00000183043

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019175 lncRNA downstream 1771 27391544 ~ 27414001 (-) False XLOC_009273
TCONS_00018829 lncRNA downstream 23865 27391557 ~ 27391907 (-) True XLOC_009273
TCONS_00019174 lncRNA downstream 51282 27352522 ~ 27364490 (-) False XLOC_009272
TCONS_00018228 lncRNA downstream 51282 27355315 ~ 27364490 (-) False XLOC_009272
TCONS_00018229 lncRNA downstream 51615 27357359 ~ 27364157 (-) True XLOC_009272
TCONS_00018238 lncRNA upstream 119395 27642233 ~ 27658419 (-) False XLOC_009275
TCONS_00019176 lncRNA upstream 134008 27656846 ~ 27658455 (-) True XLOC_009275
TCONS_00018830 lncRNA upstream 137407 27660245 ~ 27661117 (-) True XLOC_009278
TCONS_00019179 lncRNA upstream 261712 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00019178 lncRNA upstream 261712 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00018214 mRNA downstream 484231 26904635 ~ 26931541 (-) False XLOC_009269
TCONS_00018213 mRNA downstream 484773 26903267 ~ 26930999 (-) False XLOC_009269
TCONS_00018212 mRNA downstream 484773 26903267 ~ 26930999 (-) False XLOC_009269
TCONS_00018215 mRNA downstream 491779 26919222 ~ 26923993 (-) True XLOC_009269
TCONS_00018211 mRNA downstream 528744 26848909 ~ 26887028 (-) True XLOC_009268
TCONS_00018241 mRNA upstream 180571 27703409 ~ 27710513 (-) False XLOC_009279
TCONS_00018242 mRNA upstream 185901 27708739 ~ 27710575 (-) True XLOC_009279
TCONS_00018244 mRNA upstream 448460 27971298 ~ 27972474 (-) True XLOC_009282
TCONS_00018245 mRNA upstream 483930 28006768 ~ 28082310 (-) False XLOC_009283
TCONS_00018246 mRNA upstream 536153 28058991 ~ 28085563 (-) False XLOC_009283
TCONS_00018201 other downstream 1117025 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018200 other downstream 1141015 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018199 other downstream 1340292 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018197 other downstream 1420677 25994980 ~ 25995095 (-) True XLOC_009256
TCONS_00018188 other downstream 1830910 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018239 other upstream 123581 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018240 other upstream 131338 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018243 other upstream 400140 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018264 other upstream 852675 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018276 other upstream 1212089 28734927 ~ 28735041 (-) True XLOC_009299

Expression Profile

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