RNA id: TCONS_00019176


Basic Information

Item Value
RNA id TCONS_00019176
length 792
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_009275
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 27642233 ~ 27658455 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTGCTGAAGTCACAGTGAAACACCACTTGGTGGTGCTCAAGCGCAAAATGCCCTAGGTGACGAAGCACAGAAGAATTGCACAACAAATTTGATTCAATGGTGAGTTTCTTGTAGCTTCATTTTCTTTCATGGCTTGTACGTTTTTTCCAGCAAACTTTTAACCACTGAGCTTTGTGTGCTGTAATGGAGGAGGTCAAACAGAATGAAGTGGAAAAGCTTTCGTGATAAATACACAAGTAAAAGATGATTTCCAGGGAAATCATACAAGAGGATATGAGGGTATCACGCTAATGGATATGGCTCTCTGAGTATACTTATAGACAAACAAATACATGCTTGCACCTGGATACACACGTGCTGCTCTGCTAAACACCTGGACCTCCTCACAAGATGGTTGCTTGCTCATGTGTACACATTCCTCCCTCAAGTTGATGCTCCAGAAAGctaataaaattgtatttcatgccattcagccaAACAACAGATACATATTTGCTGCTTTAATGGAGGCTTTTGAGTGGGCGGCTCCACAAAACAGGAAATTCTCTCAAGTGGACTTTTGTTCAAATAAGCACCTCTCATCAGTCTTTCAGGTCTGTTGAAAACAGTGTCAGATGTGGCATCATCACACTCATTCCACTCTAACATCTAAAGGATCCGTCATGAGCCGTGAGCATTTATAGAGAGAAAATGCACTGCGAATGTTTTTCACATGTGCGAGGAAACATTATTGTGTTTCTGAATGCAGACAAGAACATGAAGCTTGCTAGTGTTGACCTAACGTAGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019175 lncRNA downstream 242845 27391544 ~ 27414001 (-) False XLOC_009273
TCONS_00018829 lncRNA downstream 264939 27391557 ~ 27391907 (-) True XLOC_009273
TCONS_00019174 lncRNA downstream 292356 27352522 ~ 27364490 (-) False XLOC_009272
TCONS_00018228 lncRNA downstream 292356 27355315 ~ 27364490 (-) False XLOC_009272
TCONS_00018229 lncRNA downstream 292689 27357359 ~ 27364157 (-) True XLOC_009272
TCONS_00018830 lncRNA upstream 1790 27660245 ~ 27661117 (-) True XLOC_009278
TCONS_00019179 lncRNA upstream 126095 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00019178 lncRNA upstream 126095 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00019177 lncRNA upstream 126095 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00019180 lncRNA upstream 126095 27784550 ~ 27956162 (-) False XLOC_009280
TCONS_00018230 mRNA downstream 134008 27415772 ~ 27522838 (-) False XLOC_009274
TCONS_00018241 mRNA upstream 44954 27703409 ~ 27710513 (-) False XLOC_009279
TCONS_00018242 mRNA upstream 50284 27708739 ~ 27710575 (-) True XLOC_009279
TCONS_00018244 mRNA upstream 312843 27971298 ~ 27972474 (-) True XLOC_009282
TCONS_00018245 mRNA upstream 348313 28006768 ~ 28082310 (-) False XLOC_009283
TCONS_00018246 mRNA upstream 400536 28058991 ~ 28085563 (-) False XLOC_009283
TCONS_00018240 other downstream 2554 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 10310 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018201 other downstream 1358099 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018200 other downstream 1382089 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018199 other downstream 1581366 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018243 other upstream 264523 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018264 other upstream 717058 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018276 other upstream 1076472 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018305 other upstream 1726678 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 2011737 29670192 ~ 29670306 (-) True XLOC_009318

Expression Profile

//