RNA id: TCONS_00018830


Basic Information

Item Value
RNA id TCONS_00018830
length 729
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_009278
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 27660245 ~ 27661117 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATGTATTCACACAGATAAAACCCAAAGCGTCCTTGAAGTTTCCCAATACAACCGTACTGACCCAGTTTGCAGCATTGCTATATGCATTTAAGTGTAAATATAAagcactaaaaaaaaaagtcaatagctGTGTGAATGCTGTCCATTATTCTCTTTTCAGCTCAAACAGAAACCTCTAGATGGCATATACAGTGTGAACTCCCCCAACACCTCCAGACTGAATGCATCTGCACTTGCTGACCAGAGCAGCATGAAGGATAACGGGCGGCGAGAAAGGGATTAATACCGTTCATCAGCCGCTCCACCTGCCCCTCTCTTCCACTGACCCATTCCTCAGGCCTCCATCTCTTATCAGATCACCATTCCTCAATGCCGTCAGTGCTCTGTCACTGCCTCGCTCCACTGTCATTTTTTATACCCCAAAAGATGTCTCTCTATATACTGTACATTGCTCTGATTCCTCCATTCCCAGAGTGGACATGTATGTTGGTAACTAGCCGTGAATAAAAAACCTAAATCAAAAGGTCATGTATGTAGTGAGGACAGGAGCGAGTGATTTAaaccatgttctaaataaaagcaacagcacatgatagaaggaataatttccatattaaaaggagtttttgttctaaccaacacctcaaattgatatattagaaatggcttctatttcttgcagctaaacaacagaaaactatgacaatgatcacctcaggtaaacctca

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019176 lncRNA downstream 1790 27656846 ~ 27658455 (-) True XLOC_009275
TCONS_00018238 lncRNA downstream 1826 27642233 ~ 27658419 (-) False XLOC_009275
TCONS_00019175 lncRNA downstream 246244 27391544 ~ 27414001 (-) False XLOC_009273
TCONS_00018829 lncRNA downstream 268338 27391557 ~ 27391907 (-) True XLOC_009273
TCONS_00019174 lncRNA downstream 295755 27352522 ~ 27364490 (-) False XLOC_009272
TCONS_00019179 lncRNA upstream 123433 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00019178 lncRNA upstream 123433 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00019177 lncRNA upstream 123433 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00019180 lncRNA upstream 123433 27784550 ~ 27956162 (-) False XLOC_009280
TCONS_00019181 lncRNA upstream 130010 27791127 ~ 27956019 (-) False XLOC_009280
TCONS_00018230 mRNA downstream 137407 27415772 ~ 27522838 (-) False XLOC_009274
TCONS_00018241 mRNA upstream 42292 27703409 ~ 27710513 (-) False XLOC_009279
TCONS_00018242 mRNA upstream 47622 27708739 ~ 27710575 (-) True XLOC_009279
TCONS_00018244 mRNA upstream 310181 27971298 ~ 27972474 (-) True XLOC_009282
TCONS_00018245 mRNA upstream 345651 28006768 ~ 28082310 (-) False XLOC_009283
TCONS_00018246 mRNA upstream 397874 28058991 ~ 28085563 (-) False XLOC_009283
TCONS_00018240 other downstream 5953 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 13709 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018201 other downstream 1361498 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018200 other downstream 1385488 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018199 other downstream 1584765 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018243 other upstream 261861 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018264 other upstream 714396 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018276 other upstream 1073810 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018305 other upstream 1724016 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 2009075 29670192 ~ 29670306 (-) True XLOC_009318

Expression Profile

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