RNA id: TCONS_00019179


Basic Information

Item Value
RNA id TCONS_00019179
length 2451
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id XLOC_009280
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 27784550 ~ 27956162 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAGAAGCGTACTCGTGGGTTACCATTAGAGGCAGATAATCTGCAGTGATTAGATGTGGCCTGGTCCCGGAGAGAGGTTGGAGAAGCGAGGCTTTCAGTGGAGAAGAATAGGGCGCAGTGCTCAGCTTTGCCTCTTCCTCTCAGAGCTCCGCGGACGGGGCAGCTGTCTATTCACACAACCCTGCCAATTAAGCACATTCAGCAGGGGCGCTGGAGAGACACCCAGCCGGAGGGCTTCTTCCCAGATCTCATCAGCCACTTCATTCAAATACATGGCCCAAGCTGTTTTAATGTGCTTAGTGCATATTGGTGCATCAAAGAAAACTGGCTCTTGTCCTGCATGAGCTGCTCGTCTGTCAGTGAGGAGTGTCTGAGGAGCGTCTGAGCAGCGTCTGAGCAGCGTCTGAGCAGTGTCTGATGATTGTGTGTCATTGTGTACGAAACATCAAGGTCATCATCACCCTGTCATGCATTCCTCATGGTGCAAGCATAGCAAAATCCTCTCCCTAGACCCCTGACCAGTGGGTTCAAAGctCAGCAGTATGGCTCTTCCTTTGCCAGCCCTGCCGGCCCATCAAAGGGTGATTTTCCACGCTGGCGGGCCAGGAGGCTCTGGACTGAAGGAGAGAGAAAGGCCTGTGCAGTAGGCAGGGACAGGTGGGAGGCGGAGCCCTGGGCAGGATCTCAACTCTCTGGGCATGAGCCAGCCGGTCACTGAACTGAAAATACTCATGCCCGGACACCCTGACTGTGCCAGGCAGGCTGAGATGGACAGATAGAGCCAGTGTATGACTGTATTAATGATTTGGCCTTGTCAGCTTTCTTGCTATTAATAAtgcatgatgtttttttttctctctttaacagcacttttatatgtatgtaaaatTGCAAAAGTATGTGATAGTGAAAGCTATCTTTTATAACAAAAAAGTTATTTGCTTTTAGTGTTTAGTTAAATGTTGCTTATTTATTATGATGCCTTACTGGTTTAAAGGCGTTTGAGTGTTTTCTATTTTAATCATTTAGccccaatcccaattctgttttATACACCTGCCACAATGCCTACACATGTATCCCTTCCCGGTTGGTCCTTGAAACAGAATTTATAGAGAAAGGATTGAAAATATGGCTCTCAGAAATGTCATCTTCTACATGATCCACCAGTCATAAGAGGGAAACCAGGAGGCCCATATGTTttctaagctaaaaaaaaattgaagtccAAAAACAGTGCATTAAAACTGTGAGTAATCTGATGAACGTCACTGTGCTTGTGCCTTTTGGAATGACTAACACATCTTCTGCATCCCTTTACAGTGGATCATGTTGCAAGAGCCACAAATTTGTTCTGCGTACGTACACAGTGCTCATATTCATGAGCTTAACCACAAAGAGAAAACTAGACTTTTTGGACAAAGTGGCCAATTTTATTAAGTCAATGAatatcagaattaaaaaaaaatatgttgtggGACTATCATGCAGCGATTATGATAAGGATCTATCGGTAGCGAAATAAAACaggcttgtttgttgtaaaaaatcatATTATAGCCAAATTGTGTACATTTGTGGGTCTCCATGCTCTGTTTGACAGCCATGTTGCCGCTCtagctgttgttgttattattattataacatttattttaccaggaaaaacacattgagattaaaaatcttttttataaGAGCGTCCttgccaagattaggcagtatcaagtcacatgggtctaacagacaacaaacaaaaaacaattaacagttaacatgaatcacacattgacaaacaaactattcaaaacatctaaaAGCCTCTGTGTTATAATTTCCAAATCATTTATACTCTTTTTGAAAGCATTTAGTGAAATCAATTCTTTAAACTGTACCTTTGTTTGTAGAGTATTccatgcaaaaggtgctgcgtatttaaaagccttttttcccCATCTCAGTCCAGACTTTAGGAACAgatagtaaataaatatcctgtgaccGAAGGCCATAGCTAAGGACAggttttttacaaatgtaattctggagatatgatgggagtaaacccaatatagatttgtaaacaaagatatgccaatgcttgagcctacgaatggacaaagcagaccaacctaCCCTAGTATACAACACACAATGAGAAGTAAgggatttaaaattaattataaatcttAGTGCACCATGGTAAGCAGTATCCAATGCATGCATGAGACAAAGCATGCATATGGGTAACATCACTGTAGTCCAATATTCAGGGAAATGTCTCATACTTTATCATTTGTAGTGTGGTCCAAAAAAATCCTTGTTTTGAGGCTGGTACTTCACCCTACCTCTATGCCTCCAACAAAAAGGAATCAAGACACCCTACCCCTTCCCTTGAATGTGAGAAATGGTGAGTTAGAGGGAAGTGTGAGGGTTCAGAGACTGGGCCTTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018830 lncRNA downstream 123433 27660245 ~ 27661117 (-) True XLOC_009278
TCONS_00019176 lncRNA downstream 126095 27656846 ~ 27658455 (-) True XLOC_009275
TCONS_00018238 lncRNA downstream 126131 27642233 ~ 27658419 (-) False XLOC_009275
TCONS_00019175 lncRNA downstream 370549 27391544 ~ 27414001 (-) False XLOC_009273
TCONS_00018829 lncRNA downstream 392643 27391557 ~ 27391907 (-) True XLOC_009273
TCONS_00019183 lncRNA upstream 126053 28010730 ~ 28015128 (-) True XLOC_009284
TCONS_00018263 lncRNA upstream 472168 28356845 ~ 28357872 (-) True XLOC_009291
TCONS_00019184 lncRNA upstream 615369 28500046 ~ 28541766 (-) True XLOC_009294
TCONS_00019185 lncRNA upstream 709866 28594543 ~ 28596484 (-) False XLOC_009296
TCONS_00018270 lncRNA upstream 709866 28594543 ~ 28596509 (-) True XLOC_009296
TCONS_00018242 mRNA downstream 73975 27708739 ~ 27710575 (-) True XLOC_009279
TCONS_00018241 mRNA downstream 74037 27703409 ~ 27710513 (-) False XLOC_009279
TCONS_00018230 mRNA downstream 261712 27415772 ~ 27522838 (-) False XLOC_009274
TCONS_00018244 mRNA upstream 86621 27971298 ~ 27972474 (-) True XLOC_009282
TCONS_00018245 mRNA upstream 122091 28006768 ~ 28082310 (-) False XLOC_009283
TCONS_00018246 mRNA upstream 174314 28058991 ~ 28085563 (-) False XLOC_009283
TCONS_00018247 mRNA upstream 194369 28079046 ~ 28085480 (-) True XLOC_009283
TCONS_00018248 mRNA upstream 201516 28086193 ~ 28095532 (-) False XLOC_009285
TCONS_00018240 other downstream 130258 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 138014 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018201 other downstream 1485803 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018200 other downstream 1509793 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018199 other downstream 1709070 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018243 other upstream 38301 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018264 other upstream 490836 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018276 other upstream 850250 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018305 other upstream 1500456 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 1785515 29670192 ~ 29670306 (-) True XLOC_009318