RNA id: TCONS_00019181


Basic Information

Item Value
RNA id TCONS_00019181
length 634
lncRNA type inter_gene
GC content 0.49
exon number 5
gene id XLOC_009280
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 27784550 ~ 27956162 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGCAGTCAATTTGCAACTCTATTCTAATGTAGTAATTTGAGAAAATCCCTCAATTCCAAGTCCTAGCTGGGAAATTGGCCTTGGCGGGCACTGGGCGAGCAGGGGGGAGGAAGGAGAGGTTGTCGATGTAGGCGTGCCAGCCTAACACCGGTGCCCGTTTGGCAGCAGAAGACGCTCAATGAGGACCACCCTGGCATGGCCACATGCAGAGGAGGGCAGAATCAAAGACAAGAGGGTTCACATTGAAGGAATATTCCAGGGCTTCTTCCCAGATCTCATCAGCCACTTCATTCAAATACATGGCCCAAGCTGTTTTAATGTGCTTAGTGCATATTGGTGCATCAAAGGTCATCATCACCCTGTCATGCATTCCTCATGGTGCAAGCATAGCAAAATCCTCTCCCTAGACCCCTGACCAGTGGGTTCAAAGGCATCCCATATTCAGAAATGAGCGGATGAGAGGGGTCCAATGTCTCCGGGCTGATGGGGACTGTTGTATTTTGGCTGCTGCGCTCGTAGCTCATCCTACAGGGGCATTTGTTGGATTGCATTGGTGGGGCTTTCCAAGTTTTAATGAGGATTaccatttttgtgtttgtatgtgtgtcacCATAATCCTTTTAGTAATAAGTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018830 lncRNA downstream 130010 27660245 ~ 27661117 (-) True XLOC_009278
TCONS_00019176 lncRNA downstream 132672 27656846 ~ 27658455 (-) True XLOC_009275
TCONS_00018238 lncRNA downstream 132708 27642233 ~ 27658419 (-) False XLOC_009275
TCONS_00019175 lncRNA downstream 377126 27391544 ~ 27414001 (-) False XLOC_009273
TCONS_00019183 lncRNA upstream 54711 28010730 ~ 28015128 (-) True XLOC_009284
TCONS_00018263 lncRNA upstream 400826 28356845 ~ 28357872 (-) True XLOC_009291
TCONS_00019184 lncRNA upstream 544027 28500046 ~ 28541766 (-) True XLOC_009294
TCONS_00019185 lncRNA upstream 638524 28594543 ~ 28596484 (-) False XLOC_009296
TCONS_00018270 lncRNA upstream 638524 28594543 ~ 28596509 (-) True XLOC_009296
TCONS_00018242 mRNA downstream 80552 27708739 ~ 27710575 (-) True XLOC_009279
TCONS_00018241 mRNA downstream 80614 27703409 ~ 27710513 (-) False XLOC_009279
TCONS_00018235 mRNA downstream 268289 27449423 ~ 27522838 (-) False XLOC_009274
TCONS_00018244 mRNA upstream 15279 27971298 ~ 27972474 (-) True XLOC_009282
TCONS_00018245 mRNA upstream 50749 28006768 ~ 28082310 (-) False XLOC_009283
TCONS_00018246 mRNA upstream 102972 28058991 ~ 28085563 (-) False XLOC_009283
TCONS_00018247 mRNA upstream 123027 28079046 ~ 28085480 (-) True XLOC_009283
TCONS_00018248 mRNA upstream 130174 28086193 ~ 28095532 (-) False XLOC_009285
TCONS_00018240 other downstream 136835 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 144591 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018201 other downstream 1492380 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018200 other downstream 1516370 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018199 other downstream 1715647 26075363 ~ 26075480 (-) True XLOC_009257
TCONS_00018264 other upstream 419494 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018276 other upstream 778908 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018305 other upstream 1429114 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 1714173 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 1921255 29877274 ~ 29877388 (-) True XLOC_009321

Expression Profile

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