RNA id: TCONS_00018261


Basic Information

Item Value
RNA id TCONS_00018261
length 8641
RNA type mRNA
GC content 0.46
exon number 43
gene id XLOC_009290
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28248052 ~ 28262709 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGGAAGTTGGGTCCTACGCATTTTCTTACGTTCGAAGTCGTAGCTTGTTATCATTTCCGTTGAGGTAGAATTGTTCAGATACGTAAGCGCTTTGGAGAATGGAAAGACTCTACGCACAACGTGCATAGTACGCCATTCCGCTGAGCACAAAACCACCGTACAACTACAGTCACTGGCGAGAAACTGCTTTTAACTTAGACGCTGCCATGGCAGCTCCTTTCCCCTACAGAGGTCTTCCTGGACCAATGCCTCCAGGTGttcctccacctcctcctgcTGTTGCTCCAGTGCCAGATTATATGACTGAGGAGAAACTGCAAGAGAAAGCTCGTAAATGGCAGCAGCTGCAGGCCAAGCGCTACTCTGAGAAAAGGAAATTTGGCTTCGTGGATGCTCAGAAAGAGGACATGCCACCAGAACATGTGCGCAAAATTATCAGGGATCATGGTGACATGACGAACAGGAAATTTCGTCATGATAAAAGAGTCTACCTAGGGGCCCTGAAGTATATGCCCCATGCAGTGCTCAAACTGCTGGAGAACATGCCAATGCCCTGGGAGCAGATCAGAGATGTACCTGTGCTCTACCACATCACAGGCGCTATATCTTTCGTGAATGAAATCCCTTGGGTTATTGAGCCAGTGTACATTTCTCAGTGGGGCACAATGTGGATCATGATGCGTCGTGAGAAGAGAGACAGACGGCACTTCAAGCGCATGCGTTTCCCGCCATTTGATGATGAAGAGCCTCCTTTGGATTATGCAGACAACATCCTGGATGTGGAGCCTCTGGAGGCGATCCAGATGGAGCTGGACCCTGATGAGGACTCTTCTGTCACAGACTGGCTCTATGAGCATCAACCTCTGAAAGACACCACCAAATACGTGAATGGGACCACATACAGACGATGGCAATTCACTTTGCCAATGATGTCCACTCTGTATCGATTGGCTAATCAGCTGCTGACAGACTTGGTGGATGACAATTACTTTTACTTGTTTGACTTGAAAGCTTTCTTCACCTCTAAAGCTTTGAACATGGCCATTCCTGGAGGACCTAAATTTGAGCCACTTGTCAGAGACATTAACCTCCAGGATGAAGACTGGAATGAGTTCAATGACATCAACAAGATCATCATCAGACAGCCAATCAGGACAGAATACAAAATTGCATTCCCTTACTTGTACAACAATCTGCCACATCATGTGCACCTCACCTGGTACCATACACCAAATGTGGTGTTCATCAAGACTGAAGATCCTGATCTACCCGCCTTCTACTTTGACCCTCTGATCAACCCCATCTCTCATAGGCACTCAGTCAAGAGCCAAGAGCCACTGCCAGATGATGATGAGGAGTTTGAACTTCCTGAGTATGTAGAGCCGTTCCTGAAGGAGACGCCGCTTTACACTGACAACACTGCTAATGGAATCGCTCTGTTGTGGGCACCTCGTCCATTCAATCTCCGCTCTGGAAGAACCAGACGAGCCATTGATGTTCCTCTCGTCAAAAACTGGTATCGTGAGCACTGTCCTGCAGGCCAGCCTGTGAAGGTGCGTGTGTCTTACCAGAAGCTTCTGAAGTACTATGTGTTGAATGCTCTAAAACACAGACCACCAAAGGCACAGAAAAAGAGATACCTGTTCCGCTCTTTCAAGGCCACCAAATTCTTCCAGTCAACAAAGCTGGACTGGGTAGAAGTCGGACTCCAGGTGTGCCGGCAGGGCTACAACATGCTGAACCTGCTGATTCACAGAAAGAACCTGAACTACCTGCACTTGGACTACAACTTCAACTTGAAGCCTGTAAAAACCCTCACAACAAAGGAACGTAAGAAGTCTAGATTCGGAAATGCGTTTCACTTGTGCCGTGAGGTTCTGCGCTTGAGCAAGCTGGTGGTGGACAGTCATGTACAGTACAGGCTTGGAAATGTTGATGCTTTCCAGCTTGCTGATGGCTTGCAGTACATCTTTGCCCATGTGGGTCAACTGACTGGCATGTACCGCTACAAGTACAAGCTCATGAGGCAGATCAGAATGTGCAAAGACCTGAAGCATCTCATCTACTATCGCTTCAACACAGGCCCAGTTGGAAAAGGTCCAGGCTGTGGGTTCTGGGCACCAGGATGGAGAGTCTGGCTGTTCTTCATGAGAGGCATTACCCCTCTTTTGGAGCGGTGGCTCGGCAATCTTCTGGCTAGGCAGTTTGAGGGTCGACACTCTAAGGGTGTTGCCAAGACTGTGACCAAACAGCGTGTGGAATCTCACTTTGATCTGGAGCTGAGAGCTGCTGTGATGCATGACATCCTGGATATGATGCCTGAGGGTATCAAGCAAAACAAGGCCAGAACCATCTTGCAGCACCTCAGTGAGTCATGGAGATGCTGGAAGGCCAACATTCCTTGGAAGGTTCCTGGGCTTCCAACTCCCATCGAGAACATGATTCTTCGTTACGTGAAGGCTAAAGCTGACTGGTGGACCAACACGGCTCACTACAACCGTGAGAGAATCAGAAGAGGAGCAACTGTGGATAAGACTGTGTGCAAGAAGAACTTGGGACGTCTCACTCGACTCTACCTAAAAGCAGAGCAGGAGAGACAGCACAATTACCTGAAGGATGGGCCTTACATCACAGCTGAGGAGGCCGTGGCCATCTACACCACCACAGTGCACTGGCTGGAGAGTCGTCGGTTCTCTCCGATTCCCTTCCCTCCTCTCTCCTACAAGCATGACACCAAGCTGCTCATTCTGGCGTTGGAGAGACTCAAGGAAGCTTACAGtgtgAAGTCTAGGCTGAACCAGTCACAGCGTGAGGAGTTGGGTCTGATTGAGCAGGCCTATGACAACCCTCATGAGGCTCTGTCCAGAATCAAACGTCACCTCCTCACTCAGAGAGCCTTCAAAGAGGTTGGCATTGAGTTCATGGACCTTTACAGTCACTTGGTGCCGGTTTATGATGTTGAACCTTTGGAAAAGATCACTGACGCATACCTGGATCAGTACCTGTGGTACGAGGCAGACAAACGTAGGCTTTTCCCACCCTGGATCAAACCAGCTGACACAGAGCCACCACCACTGCTGGTGTACAAATGGTGCCAAGGAATCAACAACTTGCAGGATGTATGGGAGACAGCAGAGGGTGAATGTAATGTTATGCTGGAGTCTCGCTACGAGAAGATGTATGAGAAGATTGATCTGACGCTGCTGAACAGGCTTCTGCGTCTCATTGTTGATCACAACATTGCTGATTACATGACAGCTAAAAACAACGTTGTCATTAACTATAAGgaCATGAACCATACAAACTCGTACGGTATCATTCGTGGCCTGCAGTTTGCCTCTTTCATTGTGCAGTACTATGGACTTGTGATGGACCTGCTGGTGCTGGGTCTGCACAGAGCCAGTGAGATGGCAGGACCTCCTCAGATGCCTAATGATTTCCTCAGCTTCCAGGATACGGCCACTGAGAGCGCGCATCCCATCCGTCTGTACTGCAGATATATAGACCGCATTCATATCTTCTTCAGGTTCTCTGCTGATGAGGCCAGAGATTTGATCCAGAGGTACCTGACTGAGCACCCGGACCCCAACAATGAGAACATTGTGGGGTACAACAATAAGAAATGCTGGCCTCGAGATGCTAGGATGAGACTGATGAAACATGATGTCAACTTGGGTCGTGCTGTGTTCTGGGACATCAAAAATCGCCTCCCTCGTTCAGTGACCACAATTCAATGGGAGAACAGTTTTGTGTCTGTGTACAGCAAGGACAACCCCAATCTGCTCTTTAACATGTGTGGCTTTGAGTGTCGCATACTCCCGAAGTGTCGCACTAGTTATGAGGAGTTCACTCACAAAGATGGTGTTTGGAATTTGCAGAATGAGGTAACAAAAGAAAGGACAGCACAGTGTTTCCTGCGTGTAGATGATGAGTCCATGCAAAGGTTCCACAATAGAGTGCGACAAATTTTGATGGCTTCTGGGTCCACCACTTTCACCAAGATCGTGAATAAGTGGaacactgctctgattggtctgatgacctaCTTCCGTGAAGCTGTGGTCAACACTCAAGAGCTTCTGGACCTGTTGGTGAAGTGTGAGAATAAGATCCAAACCCGTATCAAGATTGGGTTGAACTCCAAAATGCCCAGCCGTTTTCCTCCTGTGGTGTTTTATACCCCTAAGGAGTTGGGTGGATTGGGAATGCTTTCCATGGGACACGTACTGATCCCACAGTCTGACCTTAGGTGGTCCAAACAGACCGATGTGGGTATCACTCATTTCCGCTCTGGTATGAGTCATGAGGAGGATCAGCTTATTCCTAATCTGTACCGCTACATCCAGCCATGGGAGAGTGAGTTCATTGATTCTCAGAGAGTTTGGGCTGAATATGCCCTCAAGCGACAGGAGGCCATTGCTCAGAACAGACGTTTGACACTGGAGGATTTGGAGGACTCCTGGGACAGAGGTATTCCACGTATCAACACCCTCTTCCAGAAGGACAGACATACTCTTGCTTATGATAAGGGCTGGAGAGTCAGAACAGACTTCAAGCAATACCAGgtGCTGAAGCAAAATCCATTCTGGTGGACTCACCAAAGGCATGATGGAAAACTATGGAATTTGAACAATTACCGAACAGACATGATCCAGGCACTTGGAGGGGTTGAAGGCATTCTTGAGCACACACTGTTCAAGGGTACCTACTTCCCTACCTGGGAGGGTCTCTTCTGGGAGAAGGCCAGTGGTTTTGAAGAGTCTATGAAATGGAAGAAGCTCACTAATGCTCAGAGATCTGGTCTGAACCAGATTCCTAACCGACGATTCACCTTGTGGTGGTCTCCTACCATCAACAGAGCCAACGTATATGTAGGTTTCCAAGTGCAGTTGGACCTCACTGGAATCTTCATGCATGGTAAAATCCCAACCCTCAAGATCTCTTTGATCCAGATCTTCAGAGCTCACTTGTGGCAGAAAATTCATGAGAGCATTGTCATGGATCTCTGTCAGGTGTTTGACCAAGAGCTGGATGCTTTGGAGATTGAGACTGTCCAAAAAGAGACAATCCATCCCAGGAAGTCTTACAAGATGAATTCCTCCTGTGCGGACATTCTTCTGTTTGCCTCCTACAAGTGGAATGTCTCACGCCCCTCACTTCTAGCAGATTCCAAGGATGTAATGGACAGCACCACCACACAGAAATTCTGGATTGACATTCAGCTCAGATGGGGTGACTATGACTCTCATGACATTGAGAGATATGCCAGGGCCAAGTTCTTGGACTACACCACTGACAACATGAGTATTTACCCATCACCCACTGGAGTTCTGATTGCCATTGATCTGGCCTACAATCTTCACAGTGCCTATGGAAACTGGTTTCCCGGAGCCAAGCCTCTGATCCAGCAGGCAATGGCAAAGATAATGAAGGCCAATCCGGCTCTGTATGTGTTAAGAGAGCGAATCCGCAAGGGTCTGCAACTCTACTCTTCAGAGCCCACTGAGCCTTACCTGTCCTCCCAGAACTATGGAGAGCTCTTCTCAAACCAGATCATCTGGTTTGTAGATGACACCAATGTGTACAGAGTCACCATCCACAAGACCTTTGAAGGTAACTTGACCACCAAACCCATCAATGGAGCCATTTTCATCTTCAACCCCAGAACTGGACAGCTTTTCTTGAAGATCATTCACACTTCTGTATGGGCTGGACAAAAGCGTCTTGGACAGTTGGCTAAGTGGAAGACTGCTGAAGAAGTGGCTGCCCTGATCCGATCGCTGCCTGTTGAAGAGCAGCCCAAACAGATTATTGTGACCAGGAAGGGCATGTTGGATCCTCTTGAGGTGCACTTGCTGGACTTCCCCAACATTGTAATCAAAGGCTCTGAGCTCCAGCTCCCCTTCCAGGCCTGTTTGAAAGTGGAGAAGTTTGGAGACCTCATTCTGAAGGCCACAGAGCCTCAGATGGTCCTGTTCAATCTGTATGACGACTGGCTGAAGACCATCTCCTCTTACACTGCATTCTCTCGTTTGATTTTGATCCTGAGAGCGCTTCATGTCAACAATGATCGTGCCAAAGTTATTCTGAAACCTGACAAGACCACCATTACCGAGCCCCACCACATCTGGCCCACTCTGACGGATGAGGAGTGGATCAAAGTGGAGGTGCAGCTCAAAGATCTCATCCTGGCTGACTATGGCAAGAAGAACAATGTGAATGTGGCATCTTTGACTCAGTCTGAAATCAGGGACATCATCCTGGGAATGGAAATCTCTGCTCCATCCCAGCAGAGACAGCAGATCGCTGAGATTGAGAAGCAGACCAAAGAGCAGTCTCAGCTTACGGCCACTCAGACTCGCACAGTCAACAAACACGGAGATGAGATCATCACCTCCACCACCAGCAACTACGAGACGCAGACCTTCTCTTCCAAAACTGAATGGAGAGTAAGGGCGATCTCTGCTGCAAACTTGCACTTGCGTACCAACCACATCTATGTGTCATCGGATGACATCAAAGAAACGGGCTACACTTACATCCTGCCCAAGAACGTTCTGAAGAAGTTCATCTGCATCTCAGATCTGCGTGCTCAGATTGCAGGTTACCTGTATGGAACCAGCCCTCCAGATAACCCTCAGGTGAAGGAGATCCGCTGTATTGTGATGGTGCCACAGTGGGGTACACATCAGACCGTTCACCTTCCCAACCAACTGCCACAACACGAGTACTTGAAGGAAATGGAGCCTCTTGGATGGATCCATACACAGCCCAATGAATCGCCCCAGCTCTCTCCTCAGGATGTCACCACCCATGCAAAGGTCATGGCTGACAACCCATCCTGGGATGGCGAAAAGACTATCATTATCACTTGCAGCTTCACCCCTGGTTCCTGCACACTGACGGCCTACAAGCTGACTCCCAGTGGATATGAGTGGGGTCGACAAAACACAGATAAGGGTAATAACCCCAAAGGTTACTTGCCTTCACACTATGAAAGGGTTCAGATGCTTTTGTCTGACCGTTTCCTTGGCTTCTTCATGGTGCCTGGCCAAGTCTCCTGGAACTACAACTTCATGGGTGTCCGCCATGATCCCAACATGAAGAGGGTGAAATCTACAATGCTGACCGTGAGGATATGTATGCATAAGTACAAACAGAGACTATTTAAAGTAAAAGCACCCACAGGCTAAAGCAATGCTTTGGTTCTGTTTTGTCCCTCTATACTGTTAGCAGTAATGTAAATGCTTGGAAACTCGAAGCATGTCATCTGTTTTTTGCTTTATCATTAATTGCTTGTCATTGACTTGATTATGCACAAGTCTGAAAGCACATTGTGCTTTGTCTGTTGTTGTGAGATGAATGACTTTTTTGTCTAAAAATATCTGTACCCTTTTTCGGAGTTGTTTGTAGTACATTGTGTTTTTTATAAATCCGGAATAATTTGTCTTTTCCCTGTAGCTATGTTGTGCATCTGTTATGTACACTGTAGTTTGGGTTTAAATAAAGATTACAACTTTTATAAGCTCTGGTTTGTTTCGTAGAGTAAATTATTGGTTTGTTTACTAAATTAACAGTAGCTTTATTATCTAAAGTGCAAGGACACTATGCTTTCAGAGGAAACCAATCTGCATGCATTTGTTACAGTACACTGAACAGCTCAGCACTCAACTTAATATGGCAAAATGtgttaacatttaaatgtaatattaactgATAAAATAACAGTACTCAAGtttggtggaaaaaaataatttaaaggggtggtctactgtgtatttttaaggcttggttgtgttgtaaaagatgcaaagcaatgtgtgctcatgcttcatttgtagaaagtcatgttatttttttatatcttactttgattatatacagcaaggcagctaacatgaaaatgacagtcatatttcctagttcctctgaaaggcccgccctcaaaaGGCTCTGATCGGTCAGCTAacatgtgctgtgatttgcggatCGGCTCGCATCATGCCCCTACAAGCCCACGCCTTGGTGCTGTGTAAACAGTAGCTGAATCGGACAGAAAATGAAGTACAGTGCACATCGATAAAcatcacgcctgctctctaaaataaaatctctcAAGCGTCTTTTACATATATtgggaataagcatgtgtaagtaatataaacttttcacatttcttttgcgagtttgttatttgagatgtaaaaCGCACGGAAAGCGTCTACATACTgtagagacactgcagcgctagTGAAGACTGGGTGTTTACAAgtgtttgactgataaatatgaatttgtagctaaattgttagcggtgccaaacagcatttcctgttgtttacatcctcgctacagcataccgttaacactagaaactgtgtatgtaattaatcaattttaactaataaaaacaggttgtggctcacaattcaTCAATTgaaggagtttttagctgaatccagctcTGAACTGAGAcagattctggaagttctcctttgtcaaatgttagctctctctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatattttttttttttattttattttttttttttattctctggaatgtaattaaaatgaaattg

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0000244 spliceosomal tri-snRNP complex assembly biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005682 U5 snRNP cellular_component
GO:0017070 U6 snRNA binding molecular_function
GO:0097157 pre-mRNA intronic binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0030619 U1 snRNA binding molecular_function
GO:0030620 U2 snRNA binding molecular_function
GO:0030623 U5 snRNA binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-030131-577 Predicted to enable pre-mRNA intronic binding activity and snRNA binding activity. Acts upstream of or within spliceosomal tri-snRNP complex assembly. Predicted to be located in nucleus. Predicted to be part of U5 snRNP and catalytic step 2 spliceosome. Is expressed in brain. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 13. Orthologous to human PRPF8 (pre-mRNA processing factor 8).

Ensembl:

ensembl_id ENSDART00000175022

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019183 lncRNA downstream 232924 28010730 ~ 28015128 (-) True XLOC_009284
TCONS_00019180 lncRNA downstream 291890 27784550 ~ 27956162 (-) False XLOC_009280
TCONS_00019181 lncRNA downstream 292033 27791127 ~ 27956019 (-) False XLOC_009280
TCONS_00019177 lncRNA downstream 363375 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00018263 lncRNA upstream 94136 28356845 ~ 28357872 (-) True XLOC_009291
TCONS_00019184 lncRNA upstream 237337 28500046 ~ 28541766 (-) True XLOC_009294
TCONS_00019185 lncRNA upstream 331834 28594543 ~ 28596484 (-) False XLOC_009296
TCONS_00018270 lncRNA upstream 331834 28594543 ~ 28596509 (-) True XLOC_009296
TCONS_00018273 lncRNA upstream 354015 28616724 ~ 28617733 (-) False XLOC_009297
TCONS_00018260 mRNA downstream 469 28227058 ~ 28247583 (-) True XLOC_009289
TCONS_00018259 mRNA downstream 24146 28209966 ~ 28223906 (-) True XLOC_009288
TCONS_00018258 mRNA downstream 24295 28208440 ~ 28223757 (-) False XLOC_009288
TCONS_00018257 mRNA downstream 48003 28188362 ~ 28200049 (-) True XLOC_009287
TCONS_00018256 mRNA downstream 86828 28130557 ~ 28161224 (-) True XLOC_009286
TCONS_00018265 mRNA upstream 168912 28431621 ~ 28480576 (-) False XLOC_009293
TCONS_00018266 mRNA upstream 168954 28431663 ~ 28480546 (-) True XLOC_009293
TCONS_00018267 mRNA upstream 282434 28545143 ~ 28569786 (-) False XLOC_009295
TCONS_00018268 mRNA upstream 282434 28545143 ~ 28587490 (-) False XLOC_009295
TCONS_00018269 mRNA upstream 285919 28548628 ~ 28587147 (-) True XLOC_009295
TCONS_00018243 other downstream 324959 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 593760 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 601516 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018201 other downstream 1949305 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018200 other downstream 1973295 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018264 other upstream 112804 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018276 other upstream 472218 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018305 other upstream 1122424 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 1407483 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 1614565 29877274 ~ 29877388 (-) True XLOC_009321

Expression Profile

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