RNA id: TCONS_00019184


Basic Information

Item Value
RNA id TCONS_00019184
length 1976
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id XLOC_009294
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28500046 ~ 28541766 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGTGTATGGCCATGTTTCCTAATTTGTGTTTCAGATTTACCTGATACGTCAAACCCTGAGGGCACGTCACTCAGGCCCGGAATAAATCTGACTAAGGAGAAAACGTCTATTTTAAGATTCTCCAATAAAACTTTCCGCTTGGTCTCGGCTCGGGGCATTATCTCGGAGATGGTAGAAGAGGAATACTGACTGCAGACCTTTCGTGCCGACTGGGGTCACAGGACAGATGATGTGTTCCAGGCTTACTGTTGGTCAAAGCCTCCCAGATTGTCACCTGAGAGGGGAAACAGAGGGATATCAGCAGGTTCAGGGTTTATTAAGGCGCATCTGGGGCTGACCTGTCGGAGTCTCTCCAGCAGACGCGGGATCCCTGCCAGTCGTTTAGTGGTACGCTGGTAGTCACGGTAACGCAGCGCCAGCCGTACCAGCTCTGGGTTACGTGTGCTGATGGCTTCCTGCAACACTGAGAGACACAAGCAAACTCCAGTGTGTGGGACTGCCTGCTCTGCAATTAGTCGGGCCCTTTCGCACCATCATAACGGCACTCAGCAGCAACAACTGAGGCCCCAGCGGCCCCTGAGGGCCTCAAGCTAGAAAAACACCCGGCAGGTCCCCAGAgccagatgaagaaaaaaaagagggtGTGGACAGGCGACGTTGCTATGGCAACCCTGCATGAGGAGCTCAGATAGAAGACACAGGACGAGCGAGAGAGAAAACTGCAGATTTAAGTGTATGAGGACTCTCACATCAGTCCTTTGGGAATCTCCGCTCAACCCTGACACCAGAGACGCCTCAGATGACTGACGCTGAGGGAAAGAGAGAAGCAGATCGCTGTCAGGAGGTGTACATGCTGCAGCCGGTGAGCAAAGACTAGCTCAATGAGATTGATAACTGCTTCTGAGGGCTTCAGGGAAACACGGAGAGAAACGTGTAACTCGGGAAGACAGATTAATGGCAGTGAGACGAGGACAGAACGAAGGAGAAGCATCAGTTGTTTCAGGCTGGCCTTCTGGTGACCCGAAATGCTGCTATATATACCACACTGTGAGACACGCTAGACAACACACGCAAAATAACACCAACACAGACGCTGGCTTATCTCATCTTATCAGACAGCCACAAACAAATACAGTCAAACACACCAAACGTCATCTCTCTTCCTGTGCGGTTTACTAGATTTACCATAGTTAATGACCATGCTGAAGAAAGCATCGCTATTGCTTTTGTTCAATTTTCAAGTTCATTTCTAACACTGTGTATTAAATTCACATCATAAATACTGCCTTGATCTATGCATAGGATCTTTCTTATTGTGTTAAAACCTTCCAATAATTGGTATTAGCTTTATTAAATTGTGTTAATATctctttttatatattattaaataattaacaaacacaTATTAGTTAATTAAATGTGGTTTAACATGAGAAAGCACATGAAGAAAAGGTCTTTTTGTTTTGAGGAGAGCTTTGCTATTACCTTAGTAAGCGATCTGTTTTTCACAGCAAGCAATTTTCAATGGAACCGATACGCAATAAAACGAACGTGAACTCCAGGAGACTTTAGGTACAGGAGGGACAAGACCCATATCTAGGGACTGGAATAGACTCTTACTGCTAGCCACATCACAATGCACTACAAATCACTAAGAATGTTATTATGCAAGTTGTAAAATAATACTGTTCTATTAATGCTTGACGAGACAGTAAAGACATTGATAATGTTACAAAGATTTCtctattaaaacacacacactcacacagtcaCAAGCATATGTTTATATGCATATTATCTGCTTTTAGTGCTGCAGTGTGATCTGCAATATGTCatcataagattttttttaatgattcatCACAAGATATTTTTGTATGAGTTATTAttgaatttagtttgtttaaaaatgtgtgaaaaatttacatgttaaacaacaatattttaaaggggtggtccacagtgtatttttaag

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process
GO:1990511 piRNA biosynthetic process biological_process
GO:0071546 pi-body cellular_component
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018263 lncRNA downstream 142174 28356845 ~ 28357872 (-) True XLOC_009291
TCONS_00019183 lncRNA downstream 484918 28010730 ~ 28015128 (-) True XLOC_009284
TCONS_00019180 lncRNA downstream 543884 27784550 ~ 27956162 (-) False XLOC_009280
TCONS_00019181 lncRNA downstream 544027 27791127 ~ 27956019 (-) False XLOC_009280
TCONS_00019177 lncRNA downstream 615369 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00019185 lncRNA upstream 52777 28594543 ~ 28596484 (-) False XLOC_009296
TCONS_00018270 lncRNA upstream 52777 28594543 ~ 28596509 (-) True XLOC_009296
TCONS_00018273 lncRNA upstream 74958 28616724 ~ 28617733 (-) False XLOC_009297
TCONS_00018272 lncRNA upstream 74958 28616724 ~ 28618241 (-) True XLOC_009297
TCONS_00019186 lncRNA upstream 165521 28707287 ~ 28785593 (-) False XLOC_009298
TCONS_00018265 mRNA downstream 19470 28431621 ~ 28480576 (-) False XLOC_009293
TCONS_00018266 mRNA downstream 19500 28431663 ~ 28480546 (-) True XLOC_009293
TCONS_00018261 mRNA downstream 237337 28248052 ~ 28262709 (-) False XLOC_009290
TCONS_00018262 mRNA downstream 237414 28249167 ~ 28262632 (-) True XLOC_009290
TCONS_00018260 mRNA downstream 252463 28227058 ~ 28247583 (-) True XLOC_009289
TCONS_00018267 mRNA upstream 3377 28545143 ~ 28569786 (-) False XLOC_009295
TCONS_00018268 mRNA upstream 3377 28545143 ~ 28587490 (-) False XLOC_009295
TCONS_00018269 mRNA upstream 6862 28548628 ~ 28587147 (-) True XLOC_009295
TCONS_00018271 mRNA upstream 67259 28609025 ~ 28618502 (-) False XLOC_009297
TCONS_00018274 mRNA upstream 92814 28634580 ~ 28677725 (-) False XLOC_009298
TCONS_00018264 other downstream 124419 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 576953 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 845754 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 853510 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018201 other downstream 2201299 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018276 other upstream 193161 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018305 other upstream 843367 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 1128426 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 1335508 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 2302623 30844389 ~ 30849163 (-) True XLOC_009328

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU324993 True 1822 lncRNA 0.38 1 CI01000072 4988373 ~ 4990194 (+)