RNA id: TCONS_00018269


Basic Information

Item Value
RNA id TCONS_00018269
length 4114
RNA type mRNA
GC content 0.51
exon number 15
gene id XLOC_009295
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28545143 ~ 28587490 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCATCCTAAGCAACTGTTAAGCGCTGTTTAGTGGTTTGACAGCTGGCACGTACAGCGCATGCGCAGAACGAACAAGTCGAAGCTCGAAGACGCGGCTGCACATCTTCCTCTGTGCGACGGCACCAAATGATGTGAGTTTCGCCGCTATCTTCTCTGTCATCTCGCGTTTCTCTACCTTGAATGGCGCTGGTCACCGTACAACGGTCGCCAACCCCGAGTACATCATCCAGTCCGTGCGTGTCGGAGGCAGGCAGTGCTGAAGATGACCGGCGCTCTCAGCCCAGGAGTATCAGCGAGAACTTCCTAACTGTGAAAGGTGCCGCCCTGTTCCTCCCGCGGGGAAATGGCTCCTCCTCTTCTTCAGCACCCCGCATCCCACAGCGGCGCAACAAACACACAGGTGACCTTCAGCAGCATTTGCAGACCATGTTCACCCTGCTGCGTCCAGAGGACACAATTCGCCTGGCTGTCCGGTTAGAAAGTGCTTATGCTGTCCGTACACGGTACATGGTGATCATTTCCACCAATGGTAGACAGGACACCGAAGAAAGTGTGGTGCTGGGAATGGATTTCAGTAACTCAGACCGAACTTGCACTGTCGGGCTGGTTTTACCCTTATGGAGCGATACGCTTATACACTTGGATGGAGACGGTGGCTTCAGCGTGTCCACCGTTAACCGCGTCCATGTCTTCAAACCAGTCTCCGTGCAGGCCATGTGGTCAGCCTTGCAGTCCCTGCATAAGGTTTGCGAGGTTGCCCGATGTCATAACTACTACCCCGGCAGTCTCTTCCTGACCTGGGTTAGTTACTATCAGAGTCGCGTGACCTCCGATCAGCACTGCATCAATGAATGGAACGCAATGCAAGACGTGCAGTCCCACCGTGCAGACTCTCCTGTGCTGTTCACTGATGTGCCAACTGAGAGAGAGCGAACGGAGAGACTGATTAAGACCCGCTTGAGAGAGATCATGATGCAAAAGGACTTGGAGAACGTCACTTCGAAAGAGATTCGGACTGAGCTAGAAATGCAAATGGTTTGCAACCTGCGAGAGTTCAAGGAGTTCATTGATAATGAGATGATCGTCATTCTGGGCCAGATGGACAGCCCCACTGAGATCTTTGACCATGTTTACCTGGGTTCAGAGTGGAATGCCTCTAACCTTGAGGAACTCCAGAACAGCGGGGTTCGCTACATCCTGAATGTGACGCGAGAGATTGATAATTTCTTCCCCGGGCTATTTGAGTACCACAACATACGAGTCTATGACGAGGAGGCCACAAACCTCCTGGAGTATTGGAACGACACCTACAAGTTCATTTCAAAAGCCAAGAAAGCAGGGGTGAAGTGTCTAGTGCACTGTAAGATGGGAGTGAGTCGTTCTGCTTCCACCGTGATTGCTTACGCTATGAAGGAGTATGGCTGGGACCTGGATAGAGCCTTTGACCATGTGAAGGAACGGCGCTCTGTCACCAAACCAAACCCGTCTTTCATGAAGCAGCTGGAAGAGTACCAGGGTATCCTGCTTGCCAGCAAACAGAGGCATAACAAGTTGTGGCGTTCCCACTCAGACACTGACCTCTCGGATGGTCACGAGCCACTGTGCAAGACCCCTCGCTCACTGGACCGCTCAGATCCTCACAACAACAATGGTTCTCTTTCTATCCAGCAGATGCTGGGCATTGCTGTGCTCGAATCCCTTACCAATCCCCGACCTGTTGCATGCAACACCCATAAAAAATCGGGTGAGACACCCTCAAAGCTAGCACATGAGGACCTCTTCCTCCTTCCTCAATCCAGACAACGAGCTGCCACAGTGGGCTCTAAGCAGAGGAACTCCACTTTGATCCTTGCGGTGCGAGAGCCTGTTTCTCACCGTCACCCACCTCCTGCTCTACACGTCCTCGATTCTCCTCTTTTACCAGAGGAGAGAGGAGGAGACACGACTCCAAACCTCGGCGCCCAGTCGTCTCACCAAGTGCCTGAGCCAAAAACAGACTGTGTTGAGTTGTCCCCCGACTTGCCTGATCAAAATGACTCTTATCAAGTGTCACAAAGCTTAGAACTGTGTCTGGAAAGTGCTGTCAGTAAAGATGAAGGGAATCTGCCTTCTTCAAGTACGCCTGAGGCTGACAGCCCTTCGGAAGCCCCTGCTGTACCAGAGCTGGTCTCCAGTGATGATAACAACAACCCTAATGCAGCAGATCTAGAAGCGGCAGACGACTGTACGGATGCCAGCGTGTCTCGCCTCAGCACAGATAGCATTGACTTTTTTAGTGCTAGAGAAAAGTTCCTCTGCCTATCCCAGGACAATCACCCTTGCTCACTTTCTGAAACAACTGCAGTGCAGTCACCTCCGGCCAGATGCACCTCACCCTTGGATCACCCTAGTGAGGAACCTGAGGAGGAGTGCCACACCCATTCAGAGGAGCATAGCGACGCAGTGCTCCAACCCTCTGCTCATGACAGTACTGTGTCTGTGCGTCATATAGTTACTGAACTGGAATCCACATCACAAACCAGCAGTCCGCCACTGGCACACACCTCACCTCAGACTGCAACACcagaggagaaggaggaggaggatgaggaaGCGGCTCCGGCTCCTCATTCTCTCTCCGACAGGCCCTCAGGATCCGTGCGCCGGGTGACTGAGCAGTTGGAGCTTATACTACGTCAGGGTCAAGAGATTCCTCTCTCTCGTTCACCTCTTCCTTCCCCATGTTTGGGCTGCACACAGTCTTACTCTGATGAGCCAGAAGATTCTCCTGCCCTCTCCCAAAAGACTCCACAGGGTAAAGGAGATGACACCAAAGTGCTTGATGATGAGGACTCTGGTATAATCCCCGATCCTTCCTTCTCTGTGTTTCTTGAGGGGAGTGTTTCATTGGAGGCCGACCAGATCACTTTGAACCCCACTCTTGAGCCCAGCTCTTGTTCTTCCTCcctgttgtggctggaaggagtAACTGAGCTGGAGACAGATGTAGATGATCCGTTAAGGCCTCAAGTGCGGCTAGCACGCAGCAGTGAGGATTTGCAGAAAATCCAGGAGACTCTCAGAGAGCTCCAGGCATTTTTATATGAAGCTGGGGGACTGGGAGTTAGCACTGGACAGGTTGAGGAAAACCGGTCGTCTGATGGCAGTGGGGAGCAGCGGTTTGAACCCAAAGCACCAGCGGTGTGGCAGAGAGCCATGGAAATTGAGGCCCGCATCAGACAAGCCGGCCTCACTCCTCCCTCACTCATGAAACGCTCTGCCTCACTTGCTAAATTGGACCGGCTAGAGCTGTCTACTAATGATTTGAGCGACTGGGACTTCCACCCAGCTTCCACAGGACTTCATCATCCCTCTTCCTCTGTGTCCACCTTTCACTCCTTGCCACTGACCCACAGCCATGATGACGCTCATAAGAAGCAGCGCGTTCTACCTCAGAGCCCTTCCACCCCTGATTCTGCAGTTCATTTGATGGATGCAGACAGGACTGAAGGCTCCGCCCACCTTTTACCCTCATGTCCACAGAAAACCCAAGTGGGCGGAGCCAGCTCCCCTGAACACGTCCCCATTCAATCCACTGTTTCCGTGTCTACACGGCAACAGCAGCATGTGAAGACTCATCCCGTTCGCCGCTTGCGGAAAGCAGTGGACAAGAAAAAGACAGTCACTGTTTTGTACAACACCATGTGACCATTACTGAACTTTCATTCGCTGTTTTTGTCAGCGTACAGAACTGTCTCTGACTGCAATTTAGGTTTTGTTCAGTGAAGTCTAAGCTACATTAGTGTGCTACTGAAGGTGTGAGTGAGGTCACGTGTGAGCGAGCGTATGTCAGTTTTCTGTTCAGAAACTTTCAGGTAGCAACTCAAACAAGGGGGTTGTTTCTTAACACATGCACTTTACTCTCTTGttgaacttttttattgttttatgtttcgTCTTTTTAGATagcatttttatttgtgtattttgcaCTGGCTTGAACGGTAGAGTTGACTGTATGTCTGACAGCATGTGGAGTCATGATTCTGTTTGAAACCAAGGTAAACTTGACAACTTTTTTATCCTGTGCTTTAGCTGTGACTATTATAAAATAAACTGCACTATTTTATTGA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030837 negative regulation of actin filament polymerization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0003779 actin binding molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3810 Predicted to enable actin binding activity and phosphoprotein phosphatase activity. Predicted to be involved in actin cytoskeleton organization and negative regulation of actin filament polymerization. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytoplasm. Orthologous to human SSH2 (slingshot protein phosphatase 2).

Ensembl:

ensembl_id ENSDART00000156049

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019184 lncRNA downstream 6862 28500046 ~ 28541766 (-) True XLOC_009294
TCONS_00018263 lncRNA downstream 190756 28356845 ~ 28357872 (-) True XLOC_009291
TCONS_00019183 lncRNA downstream 533500 28010730 ~ 28015128 (-) True XLOC_009284
TCONS_00019181 lncRNA downstream 592609 27791127 ~ 27956019 (-) False XLOC_009280
TCONS_00019185 lncRNA upstream 7396 28594543 ~ 28596484 (-) False XLOC_009296
TCONS_00018270 lncRNA upstream 7396 28594543 ~ 28596509 (-) True XLOC_009296
TCONS_00018273 lncRNA upstream 29577 28616724 ~ 28617733 (-) False XLOC_009297
TCONS_00018272 lncRNA upstream 29577 28616724 ~ 28618241 (-) True XLOC_009297
TCONS_00019186 lncRNA upstream 120140 28707287 ~ 28785593 (-) False XLOC_009298
TCONS_00018265 mRNA downstream 68052 28431621 ~ 28480576 (-) False XLOC_009293
TCONS_00018266 mRNA downstream 68082 28431663 ~ 28480546 (-) True XLOC_009293
TCONS_00018261 mRNA downstream 285919 28248052 ~ 28262709 (-) False XLOC_009290
TCONS_00018262 mRNA downstream 285996 28249167 ~ 28262632 (-) True XLOC_009290
TCONS_00018260 mRNA downstream 301045 28227058 ~ 28247583 (-) True XLOC_009289
TCONS_00018271 mRNA upstream 21878 28609025 ~ 28618502 (-) False XLOC_009297
TCONS_00018274 mRNA upstream 47433 28634580 ~ 28677725 (-) False XLOC_009298
TCONS_00018275 mRNA upstream 87330 28674477 ~ 28785512 (-) False XLOC_009298
TCONS_00018277 mRNA upstream 195554 28782701 ~ 28793163 (-) False XLOC_009298
TCONS_00018278 mRNA upstream 198264 28785411 ~ 28805493 (-) False XLOC_009298
TCONS_00018264 other downstream 173001 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 625535 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 894336 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 902092 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018201 other downstream 2249881 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018276 other upstream 147780 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018305 other upstream 797986 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 1083045 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 1290127 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 2257242 30844389 ~ 30849163 (-) True XLOC_009328

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_04992647_05006768.mRNA True 4350 mRNA 0.52 17 CI01000072 4992218 ~ 5006768 (-)