RNA id: TCONS_00018270


Basic Information

Item Value
RNA id TCONS_00018270
length 1764
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_009296
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28594543 ~ 28596509 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAACTTTAGTGGTCACGTGACGAACAACAGGAAGGGACGCGAGTCTTCTTCAGGACAAGAGAGTTCCTGAATCCATCAAAGTGTGGGAGGAAATCACCTAAAATATCATGGACCAACTTGCAAATGTCATAGGACAACAGCACATGGGTCTGACTGTAGGATTGAGTTTGTTGATCATCGTTGTGATTATCGTCCTCGCTGCTGTTGTTTACACTCCACCGGGCGCCGTTACGCGCTGCTTGAGGAGGAGGAGAAGCGAAGAGCAGCTCTCATTGACCGCTAACAGAATATCATGacttatgatgatgatgatgacacaaattaataataactaCATGGATCTCTGTGTTGGACCCACAACAACAATAAACTGTTAAACCGTAAATATCAGAACAACATTTACTCCTCAGTCTGATAATGGTTTAAAACATAGTGACATCCCAACAAATCACAGTTTGCACAGTTTTTCCAGTTTTTTCGTGGTGTTAGATGAGATCACACTTTCCACGGCAGATAAATAAGATCCAGCCCCAGACGCCATGATGTTGCCTGAATCTTCTTCAGGTATCTAGACAACAAGTCAGCAGAGTTTCCAATATTCAAACCTGTTAACCAGTATTCAAACAGTGTACTGTAAATATAGGAGTTGACTGTGTACAGAAGCCAGAgaagagcagaagcaggagacgaaGTGATGATAAGAAATGAGCAGtgtttattgaataatcttagttgcATGTGTTTCAGTGCGCTGTTATACTTCATCTGAACAGCACAAATTTAGCAATGTTGTTATACAGACCTTAAATTTGATACAGGCCCTCATATCAGTGGAGAGAAACATTTCATGAAACCATCACTTTAAGACTAAACAATAAGAACAGGtaataataaatatctaaaataaagaaatcaaatcaataaaggattaatataatgaataacgaaaacataaatgaataaaaaatatgaatcaaataaatgaataactaagATTTATAATTGATTTTATGGCCATAAATGAAATTatcaatgtaaaacaaataataataaaacaaaacgatATATAACATAGAATTGATTTCATTTAAAGCACATACAGGTTATTACAAATTTCTGATTCTACAATGGAAATGTGAATACAGAGGAAATCAGAATTAATaaacccctttgaatttttttttattttttaaatatttccaaaattatgtttaacagagcaaggaaattttcacggtatgtcttgacactatttttcttttggagaaagtcttatttgttttatttcggctagaataaaagcagttcttaattttctaaaaaacattttaaggtcaaaattattagcagtttaagctatatattttttcaatagtcttcaAAATAAGCAACTGTTATAcaattgcctaattaacctagttgagcctttaaatgtcactttaagttgtatagaagtgtcttaaaaatatctagtcgtatattgtttactgtcatcatggtaaagataaaataaatcagttattaaaaatttgttatttaaactattatgtttagaaatgtgttgaaaaaaaaatcgtcTCTTTTTTTACTCAgatattggagaaaaaaaaataaacggggttaataattctgacttcaactgttcataTGTTAATGTAAATACATATGTGTATGCTTATATGTTAATGTAGGCTAAATATGGAAGCTGGGTTATTTTGACCTCATACTGAAATGTGCTGTAAATACAATTAAGGTAAATTTTG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0051674 localization of cell biological_process
GO:0090527 actin filament reorganization biological_process
GO:0035239 tube morphogenesis biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0016477 cell migration biological_process
GO:0035295 tube development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0048870 cell motility biological_process
GO:0040011 locomotion biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005854 nascent polypeptide-associated complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019184 lncRNA downstream 52777 28500046 ~ 28541766 (-) True XLOC_009294
TCONS_00018263 lncRNA downstream 236671 28356845 ~ 28357872 (-) True XLOC_009291
TCONS_00019183 lncRNA downstream 579415 28010730 ~ 28015128 (-) True XLOC_009284
TCONS_00019181 lncRNA downstream 638524 27791127 ~ 27956019 (-) False XLOC_009280
TCONS_00018273 lncRNA upstream 20215 28616724 ~ 28617733 (-) False XLOC_009297
TCONS_00018272 lncRNA upstream 20215 28616724 ~ 28618241 (-) True XLOC_009297
TCONS_00019186 lncRNA upstream 110778 28707287 ~ 28785593 (-) False XLOC_009298
TCONS_00019187 lncRNA upstream 117583 28714092 ~ 28785593 (-) False XLOC_009298
TCONS_00019188 lncRNA upstream 130388 28726897 ~ 28785593 (-) False XLOC_009298
TCONS_00018268 mRNA downstream 7053 28545143 ~ 28587490 (-) False XLOC_009295
TCONS_00018269 mRNA downstream 7396 28548628 ~ 28587147 (-) True XLOC_009295
TCONS_00018267 mRNA downstream 24757 28545143 ~ 28569786 (-) False XLOC_009295
TCONS_00018265 mRNA downstream 113967 28431621 ~ 28480576 (-) False XLOC_009293
TCONS_00018266 mRNA downstream 113997 28431663 ~ 28480546 (-) True XLOC_009293
TCONS_00018271 mRNA upstream 12516 28609025 ~ 28618502 (-) False XLOC_009297
TCONS_00018274 mRNA upstream 38071 28634580 ~ 28677725 (-) False XLOC_009298
TCONS_00018275 mRNA upstream 77968 28674477 ~ 28785512 (-) False XLOC_009298
TCONS_00018277 mRNA upstream 186192 28782701 ~ 28793163 (-) False XLOC_009298
TCONS_00018278 mRNA upstream 188902 28785411 ~ 28805493 (-) False XLOC_009298
TCONS_00018264 other downstream 218916 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 671450 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 940251 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 948007 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018201 other downstream 2295796 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018276 other upstream 138418 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018305 other upstream 788624 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 1073683 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 1280765 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 2247880 30844389 ~ 30849163 (-) True XLOC_009328

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU325371 True 737 lncRNA 0.41 2 CI01000072 5026121 ~ 5027092 (-)