RNA id: TCONS_00018274


Basic Information

Item Value
RNA id TCONS_00018274
length 1653
RNA type mRNA
GC content 0.48
exon number 12
gene id XLOC_009298
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28634580 ~ 28805493 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAGGGGTTTTTCCAGATATGGCAACCTCGACAGAAAGACACGCGATTTCTCTGGGTTTCCTGTTTCCGGAATTCCGTACGGACTGACTGGCTGTCGGCGAATGAAATAAACAAAGACCTACAAATCGGACTCGAACACCTCCTCTTCTCACCTGCAAACATGGAGACTGGCCTGAGTCAGGAGAAAGCTTCAGCTTTTGTCAAGCGCTTCCGCTCGGAACCCCGATATCTGCTTGCCCAGAATGTCTCAACTTGCATCGACCCATTAGAGGTGTGTTTACACCGGCAGACGGTCCAGGACACAGTACACATCTTCCAGCACAGCATTCCCACAGAGGGCAAACCTGTCACCAACCAGAAAAACTCAGgCAGATGTTGGATCTTCTCATGCCTCAATGTCATGCGTCTTCCATTTATGAAGAAGTTTAACATTGAAGAATTTGAATTCAGTCAGTCTTATCTATTTTTCTGGGATAAGGTGGAGAGGTGCTATTTTTTTCTCCATGCCTGTGTGGAAACGGCCCAGAGGAAAGAGCCAGTAGATGGCAGATTGGTTCAGTTCTTGCTATCAAATCCTACCAATGACGGTGGACAGTGGGATATGCTGGTCAACCTTATTGAAAAATACGGTGTGGTCCCTAAGAAGTGCTTCCCCGAGTCTCACAGCTCAGAGGCTTCCCGCAGAATGAACGATATCCTCAATCACAAGATGAGGGAATATTGTCTACGGCTGAGAAATATGGTGGCCAGTGAATCTACTAAAACTGAGATCTCTGAAACTATAGACACCATGATtgaggagGTGTTTCGGGTGGCCAGTGTGTGTTTGGGCAGTCCTCCAGACACCATCTGTTGGGAATACCGGGACAAGGACAAGAACTTCCACCACCTGGGCCCTTTAACACCTCTGGAGTTTTACACAGAACACGTCAAGCCTCTCTATAATCTCCAGGACAAGATATGCCTGGTTAATGATCCTCGACCTCAAAACCCCTATGGGAAGCTGTACACAGTAGAGTTCTTGAGCAACATGGTGGGCGGTCGCAAAACACTATACAACAACCAGCCTGTGGAGCTGCTCAAGAAAGCCGCTGCAGATTCCATCAAGAAAGGAGAGGCAGTGTGGTTCGGGTGTGATGTGGGCAAACATTTCCACAGTAAACTAGGAATCAATGACATGAATGTGTTTAACCATGACCTAGTGTTCGGCGTCTCTGTCAAAAACCTCTCTAAAGCAGAAAGGTTGATCTACGGAGACTCGATGATGACCCACGCCATGATCCTGACCGCAGTTACTGACAAGGTTGGGAAAGAGGCATGTTATGAGAAGTGGCGTGTGGAGAACTCGTGGGGAGATGACCGTGGGAATAAAGGATATCTGATCATGACAGACGAGTGGTTCTCCGAGTACGTGTACGAGGTGGTGGTGGATAAGAGTTTTCTCTCTCCTGAAGTGCTGGACGTCATGCAGAAGGACCCCGTCGTCCTCCCGGCCTGGGACCCCATGGGAGCCCTGGCGTAACCACAGGAGCCAGTCTGATCTCCTCAACTCCACCTTCAGCTGGTTTTAACCCCCTCCCACCATCTCTCACAACAAGCCtggtctagaaaaaaaaaagaataaagtttttttgcctctttttttattatca

Function

GO:

id name namespace
GO:0009636 response to toxic substance biological_process
GO:0043418 homocysteine catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-030131-8485 Predicted to enable cysteine-type peptidase activity. Predicted to be involved in homocysteine catabolic process and response to toxic substance. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm. Orthologous to human BLMH (bleomycin hydrolase).

Ensembl:

ensembl_id ENSDART00000060255

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018272 lncRNA downstream 16339 28616724 ~ 28618241 (-) True XLOC_009297
TCONS_00018273 lncRNA downstream 16847 28616724 ~ 28617733 (-) False XLOC_009297
TCONS_00018270 lncRNA downstream 38071 28594543 ~ 28596509 (-) True XLOC_009296
TCONS_00019185 lncRNA downstream 38096 28594543 ~ 28596484 (-) False XLOC_009296
TCONS_00019184 lncRNA downstream 92814 28500046 ~ 28541766 (-) True XLOC_009294
TCONS_00019186 lncRNA upstream 29562 28707287 ~ 28785593 (-) False XLOC_009298
TCONS_00019187 lncRNA upstream 36367 28714092 ~ 28785593 (-) False XLOC_009298
TCONS_00019188 lncRNA upstream 49172 28726897 ~ 28785593 (-) False XLOC_009298
TCONS_00019190 lncRNA upstream 80730 28758455 ~ 28772574 (-) False XLOC_009300
TCONS_00019189 lncRNA upstream 80730 28758455 ~ 28772574 (-) True XLOC_009300
TCONS_00018271 mRNA downstream 16078 28609025 ~ 28618502 (-) False XLOC_009297
TCONS_00018268 mRNA downstream 47090 28545143 ~ 28587490 (-) False XLOC_009295
TCONS_00018269 mRNA downstream 47433 28548628 ~ 28587147 (-) True XLOC_009295
TCONS_00018267 mRNA downstream 64794 28545143 ~ 28569786 (-) False XLOC_009295
TCONS_00018265 mRNA downstream 154004 28431621 ~ 28480576 (-) False XLOC_009293
TCONS_00018277 mRNA upstream 104976 28782701 ~ 28793163 (-) False XLOC_009298
TCONS_00018278 mRNA upstream 107686 28785411 ~ 28805493 (-) False XLOC_009298
TCONS_00018279 mRNA upstream 109162 28786887 ~ 28802260 (-) False XLOC_009298
TCONS_00018280 mRNA upstream 109367 28787092 ~ 28802207 (-) False XLOC_009298
TCONS_00018281 mRNA upstream 109487 28787212 ~ 28802220 (-) False XLOC_009298
TCONS_00018264 other downstream 258953 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 711487 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 980288 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 988044 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018201 other downstream 2335833 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018276 other upstream 57202 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018305 other upstream 707408 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 992467 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 1199549 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 2166664 30844389 ~ 30849163 (-) True XLOC_009328

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_05053749_05071797.mRNA True 1529 mRNA 0.49 12 CI01000072 5053644 ~ 5071797 (-)
bowfin (Amia calva) AMCG00005751 True 1113 mRNA 0.55 9 CM030142.1 9115471 ~ 9128845 (+)