RNA id: TCONS_00019188


Basic Information

Item Value
RNA id TCONS_00019188
length 993
lncRNA type read_through
GC content 0.48
exon number 3
gene id XLOC_009298
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28634580 ~ 28805493 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCCGCTGCTTCTGCACTGAGGTATGGTCATGTTTTCTAATGAGCAGCGGCGCGTTTGCCGCCTGCAGATTCGCTTTCTTCGCTCCTCCCACTGCGCACATGCAGGTGAAGCACACCATGATAGAATCCACTGGACCACATGAGGAATTTCATAAAGGCACTGCGTTTTTATATGTTGATCAGACAGCTCAAGTCCTGCATCCATCAAAGAATGTTACAACTCGTATCCCTGGGGGTCCGGCTCAGGATTAGAGACGTGCGAGCTTCAGATAGAGAACAtcctctcacacatacacaatatGAGATCACCACAGTCCAATATCAACGGGACCACTTGCTCTTAAGCTCTCCAAACAGCAGAGGAAGGATAGAAGGGTCTCCGAAGAATAACAAAGGATCTGGAAGAAAGCGTGGATTCCTCTTCAGTGATGTCACTCTTATTGAGGACTGCTGGGTTTGTCCACCCCTTTTTCCTCAGTTTGACCCAAGCCGTCCCCAACCCCCCACTTCTATAGTGACGTCGTCATGGATACAGGGTCCATGCGGTGCAAACAGCTGAAGAGATGACTGGCCCGGGCTCCTGTCCTCATCTTTTCCCCAATGTTCACTCTCTCACCCTCTTAAGACCTTCCTGCGCAGCCCTCCAAGACCTCACAGAGGGacaaagagagagcgagagacaaAACAACAGGCCGCGCGAGGGAAAGAGACACAGTGAGGAAGGGAACACGATAAAAGGGAAAGTGAAAAGAGATTCTTTATTCAAAAGCCCACCAATAAAGAGGGGAAAGAGGGGGTAACATTACTCAGAAAGAAATCCAACTCTCCAgaagaaagatgaaaaaaaaacagtagtagATGGGACTTTCCTGCCAGGTGCCGGACATTGATTTAGAGGCTCCTGGGAGTTTTTTACTCTGGATGTTTGCATCATATTTTGGTAATCTGCACAGTTTTGATGTCATATGATATATTTTGGGGTGTCACTTTGAG

Function

GO:

id name namespace
GO:0009636 response to toxic substance biological_process
GO:0043418 homocysteine catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018272 lncRNA downstream 108656 28616724 ~ 28618241 (-) True XLOC_009297
TCONS_00018273 lncRNA downstream 109164 28616724 ~ 28617733 (-) False XLOC_009297
TCONS_00018270 lncRNA downstream 130388 28594543 ~ 28596509 (-) True XLOC_009296
TCONS_00019185 lncRNA downstream 130413 28594543 ~ 28596484 (-) False XLOC_009296
TCONS_00019184 lncRNA downstream 185131 28500046 ~ 28541766 (-) True XLOC_009294
TCONS_00018288 lncRNA upstream 106123 28891716 ~ 28896925 (-) True XLOC_009302
TCONS_00019191 lncRNA upstream 219451 29005044 ~ 29009059 (-) True XLOC_009303
TCONS_00018295 lncRNA upstream 370469 29156062 ~ 29162253 (-) False XLOC_009306
TCONS_00018298 lncRNA upstream 536627 29322220 ~ 29322866 (-) True XLOC_009307
TCONS_00018303 lncRNA upstream 598122 29383715 ~ 29384612 (-) False XLOC_009309
TCONS_00018274 mRNA downstream 49172 28634580 ~ 28677725 (-) False XLOC_009298
TCONS_00018271 mRNA downstream 108395 28609025 ~ 28618502 (-) False XLOC_009297
TCONS_00018268 mRNA downstream 139407 28545143 ~ 28587490 (-) False XLOC_009295
TCONS_00018269 mRNA downstream 139750 28548628 ~ 28587147 (-) True XLOC_009295
TCONS_00018267 mRNA downstream 157111 28545143 ~ 28569786 (-) False XLOC_009295
TCONS_00018279 mRNA upstream 1294 28786887 ~ 28802260 (-) False XLOC_009298
TCONS_00018280 mRNA upstream 1499 28787092 ~ 28802207 (-) False XLOC_009298
TCONS_00018281 mRNA upstream 1619 28787212 ~ 28802220 (-) False XLOC_009298
TCONS_00018282 mRNA upstream 1763 28787356 ~ 28802140 (-) False XLOC_009298
TCONS_00018283 mRNA upstream 1994 28787587 ~ 28802192 (-) True XLOC_009298
TCONS_00018264 other downstream 351270 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 803804 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 1072605 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 1080361 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018201 other downstream 2428150 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018305 other upstream 599540 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 884599 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 1091681 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 2058796 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018355 other upstream 2276964 31062557 ~ 31067406 (-) True XLOC_009336

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU325059 True 4210 lncRNA 0.37 2 CI01000072 5122881 ~ 5127232 (+)