RNA id: TCONS_00018278


Basic Information

Item Value
RNA id TCONS_00018278
length 3347
RNA type mRNA
GC content 0.37
exon number 4
gene id XLOC_009298
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28634580 ~ 28805493 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gttcacagtactcattaggattggctttaacaaacttaaatagtttgttgcaatcggtttcctcaaatggtttgagttaccttaacattttgggttttacagagcacataagtgtgtgtgtgtgtgtgtgtgactcctaATTTGTTTATCTGCATTTTTTACTCAGCATTcctttattaacttttttttatgtgcTCTAAAATTAAACCTGAAAAACATGATCTGGTCTGTCCAGCCAAAACTCACATTACAACACCAACTCATTTTACGGATCCAGTCTTGGCCTCGTATATGGACTCTACGACCTGCTCAGTGACCTGCTGTATGTGCAGTTGTTGTGAGGATCTTGTTGACTGGATCTCGCTGGAGGAGCTTCGAGTCTTCATGAGGAAAATCTCAGATTACAAAATGCATCTGCTGTGCTCGACTGCACCACTAGCTTTCCCACAGGATTGAACCTGAGATGAACTTGGAAAAATAAACGCAGAAGGGCCCATAAAAAAGCTGTATAAGTGCTCCCTCTGCTGTCGCTTACATGAATGTTCGCCTAAGACTGTGACGAAGTCTTTCCGGGTTGAAGTTGATTTTCCTCTATCCACATGTGATTCACATGTTTACACGGAGAGTTGTGTTCGGCGCATTATATTGGCGACACTGGAATATGGAAATATTTAATTCGTACTCTTATAGTTAAAACTAGAGTTCAAACATGTCGGACAGTGAAGAAGAAACTCGTGAACCGACTTCAGGAGGACGGAAAAGAGATTCAAAGTACCAGTGTCCGGCCGAGTTTATATCCTTTCCGTATGATTCCTCTGTAAATGCATTATTGGGTGAAGAGAAACAGCAGTTATGGTTCATCAAAGCTCCAGCTCGTTTTGATCCTAAATGCTTTAATAACCTCCAACTTCCTTTATCAGGACTGGGAATGGTCCAGTCTAAGGGTAACAGCCCACAAATCTACAGTGTTGTCAGTGGTGGGACGACGCCATCAGACCTCAATCTTCTCATTTCCAAAGGTGAAAATCAGAAGCTTTCTCTCTGCTCCACCGGCTTCAGCGGTGTCCTGAAGATCTCCGAGAGCTATGGAGACTGTGGTGAAACCCAGGGCCCGATTCCTGTACCAGCCGCTCCAGCTCCACGCATCCCAGACGGCCTCAAACAGCGTTTCCATCCTTTCGGTAGTTCAACTGGAGCTCGCATGCAAAAAGAAGCCACTTTTGCTTCTCCAACTCCACTCCAgaaaacaagacaggatgtgGGTGATGGAGATGAgccaaaaaagaagaagaagaaaaagaaagacaagAGTCAGGGGGACAGTGGAGATGTTTTTATTAAGCAAGAAGAAACACAAATTGAATGTaatcagttagagatatctgaaCTTATGGAGGAAGAGCCGATGGAGGAAaggagaagaaaaaagaaaaaggtgaagaaagaaaaggaaagagaGAATCCAGATATGGTTgatgcaagtttatttttaaaaactgagcAGCTGGATCCTTCTTACGATGACACTGAAGTTACCCCGGGGAAaacgaagaagaagaaaaagaaaagtagtCGAAATGAGTAGATTACTAAAAGAACTTGAAATGttttaatcgttttttttttgtcatgttcaCATATATAAATGAATTTACCTGTCAAAAAAGTGCTGAGAATCAGTGATTTCTTATTGATTGTGTTTTCAAATTTTCTATGTAATCAGGCTTATTATAGTTAACcgtaaaaacaacaattttactttAACTGGAAAACCTAAGAACATATATGGAAATGTATTTTATCTACTTGCcaagaaaaatattttacttagtttaataaaataaataaaaaatgcaaaaatgcattcactgtaaaaatgcaaagTTTCACACAATCGAGTTAAGTTGGGACAACAAGAAGGAATTAAGGTAACTTATTAGattttcaaatttaagtggattgaacataaaacaatgaatgaTTGTgcggtttcagctcatttttaataattgctttgaacaaacaacaaatattttttatgtgtagacaaacatgaacacacacacagttgaagtcagaattattaaacccactcaattattagccccccccccccccccccctgtttaatgtagagaagattttttctaacacatttttaaatataatagtttttaaaactgatatcttttatctttgccaggatgacagtaaataatattttactttatatttttcaagacacttctatacatcttaaggTTCTATACTTCTATATAGAAGCTAGTATAGAAGAATTTGTATACTAGCTTAACTAGATTATGGTTATGGTATAATGATGGTTCTGTGGactattgggaaaaaatatagcttaaagggaataataattttgaccttaaaatggttctttaaaaaattaaaaactgcttttattctagctgaaataaaacaaacaagactttggaaaaatatcagacatactgtgaacttttccttgttctgttaaacataatttgggaaatatttaaaaaagaaaaaaactcaaaggagggctaataattctgacttcaactgtttgtatttatatatgcgtGTTTGTGTATTTACTGTGTTATCCAGTTAACAGTAAGAGTATGGTCACTGCATTTGACTTAAGTGACTGTTAATTGTCTTGAGATTTTTTGTCACTTgaaattttacaaaatataattttttctaCCTTATATTTAGAAATTTCACTGTCATGCCTGTTGTTGTTAGTCTATTTTGAAGCtccattgtatttatttctcgCTCATCAATTAACAGTCACTTAAGTCAAATGCAGTGACCATACTCTTACTGTTAACTATGGATAACACAGTaggataatatacattttaagaccctaaAAATAGAAGAAAGAAAAGCTAAACTTAAAACTACTATCAAGCTATCAAATAATGGGAGGTGGAGCACTTCGGAGCATCAAAAGTTGAGGTAAATTATCTGTTGTTATATTGTCTAAAAGGCAACAATACCGTCAAGATAAaccaatttaatattatttaatttatttttttacttttttcataaATGTTGATAGTAAATGTGAAAACACTTATTTCCCGGTTTTGTGCAATGCTACTGGTTGACCGGTGGGTGGCGGTAGATCTCCCTCTGCTGGCCGCTGCTTCTGCACTGAGGTATGGTCATGTTTTCTAATGAGCAGCGGCGCGTTTGCCGCCTGCAGATTCGCTTTCTTCGCTCCTCCCACTGCGCACATGCAGGTGAAGCACACCATGATAGAATCCACTGGACCACATGAGGAATTTCATAAAGGCACTGCGTTTTTATATGTTGATCAG

Function

GO:

id name namespace
GO:0009636 response to toxic substance biological_process
GO:0043418 homocysteine catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

Ensembl:

ensembl_id ENSDART00000179617

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019190 lncRNA downstream 12837 28758455 ~ 28772574 (-) False XLOC_009300
TCONS_00019189 lncRNA downstream 12837 28758455 ~ 28772574 (-) True XLOC_009300
TCONS_00018272 lncRNA downstream 167170 28616724 ~ 28618241 (-) True XLOC_009297
TCONS_00018273 lncRNA downstream 167678 28616724 ~ 28617733 (-) False XLOC_009297
TCONS_00018270 lncRNA downstream 188902 28594543 ~ 28596509 (-) True XLOC_009296
TCONS_00018288 lncRNA upstream 86223 28891716 ~ 28896925 (-) True XLOC_009302
TCONS_00019191 lncRNA upstream 199551 29005044 ~ 29009059 (-) True XLOC_009303
TCONS_00018295 lncRNA upstream 350569 29156062 ~ 29162253 (-) False XLOC_009306
TCONS_00018298 lncRNA upstream 516727 29322220 ~ 29322866 (-) True XLOC_009307
TCONS_00018303 lncRNA upstream 578222 29383715 ~ 29384612 (-) False XLOC_009309
TCONS_00018274 mRNA downstream 107686 28634580 ~ 28677725 (-) False XLOC_009298
TCONS_00018271 mRNA downstream 166909 28609025 ~ 28618502 (-) False XLOC_009297
TCONS_00018268 mRNA downstream 197921 28545143 ~ 28587490 (-) False XLOC_009295
TCONS_00018269 mRNA downstream 198264 28548628 ~ 28587147 (-) True XLOC_009295
TCONS_00018267 mRNA downstream 215625 28545143 ~ 28569786 (-) False XLOC_009295
TCONS_00018284 mRNA upstream 17243 28822736 ~ 28860282 (-) True XLOC_009301
TCONS_00018285 mRNA upstream 68948 28874441 ~ 28908027 (-) False XLOC_009302
TCONS_00018286 mRNA upstream 73571 28879064 ~ 28908027 (-) False XLOC_009302
TCONS_00018287 mRNA upstream 75645 28881138 ~ 28904371 (-) False XLOC_009302
TCONS_00018289 mRNA upstream 205797 29011290 ~ 29012493 (-) True XLOC_009304
TCONS_00018276 other downstream 50370 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018264 other downstream 409784 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 862318 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 1131119 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 1138875 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018305 other upstream 579640 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 864699 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 1071781 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 2038896 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018355 other upstream 2257064 31062557 ~ 31067406 (-) True XLOC_009336

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU31523 True 485 lncRNA 0.29 1 CI01000004 5297511 ~ 5297995 (-)