RNA id: TCONS_00018287


Basic Information

Item Value
RNA id TCONS_00018287
length 2878
RNA type mRNA
GC content 0.48
exon number 22
gene id XLOC_009302
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28874441 ~ 28908027 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATCAGGCTGTTCGGGCGGCTGACTGACAGGCGGACATACACAGTAGTTCTGACTGGAATGGCAGATGATAACGTATCAGCCGGCAGTGGGATGGAGATGGACGACCGTCTCTCTCACCTGGAGCAGAGGGTGCAGCTGCAGGAGGATGAGATTCAGCTGCTAAAGGCGGCGCTGGCCGATGCTTTGAGACGACTGGGCTGCTGTGAGGAGATCACACAAGCCAGCAACAAGAAAAGTGGACCTACTAAAGTTCGGCAGATACTGCAAGCTCTGCCATCCAAGCCTCTGACAAATGGCTATGTGCAAACAAAACGCTTGAGCGGCTTTCCTTCCTCTCCCTCATCTCCAAAAAAGGAAGTGCTGATGTCTATCAAGAGGAAGAGCATGTCCACTGAACGCCTGTCCACAGTGAAGAAGGAGATGGCCGATTCCCGCAGCAGAACCACCTCATCCAGCAGTTCAACATGCGGAAAGAGAGACAGcaaaACCAAAGAGTGCTCCTTCAATGCTGATGAGGGTTACGTTCGGATGTTTTTACGTGGACGTCCGATCACCATGCATATTCCAGACCAGCTGAGGTACAGCTACAGTCTTGAAAGCAAGGTGGCGCTGCCGGAGCGCAAGCTGAAACTTCAATGGGTTTATGGCTATAGGGGAAGAGACTGTCGCTCTAACCTCTACCTGCTGCCGACTGGAGAGATTGTGTACTTTAATGCTTCCGTAGTGGTGCTTTACAACGTTGAAGAGCAGCAACAAAGGCACTATCTGGGCCACAACGATGATGTCAAGtgTTTGGCCATCCATCCAGACATGGTCACTATAGCAACAGGACAAGTTGCCGGAACATCCAAAGATGGCAAAGCTCTGCCACCTCATGTCCGTGTCTGGGACTCTGTCAGTCTGAACACTCTTCATGTGATTGGAGCAGGTGTGTTCGACCGAGCTGTCACCTGTGTTGCCTTCTCAAAGTCGAATGGTGGAGCTCATTTGTGTGCGGTTGACGatgcaaatgatcacattttgTCAGTTTGGGACTGGCAGAAAGAAAAGCAGCTTGCCGAGGTTAAGTGCTCTAATGACTCTGTTTTGGGTGCTGTCTTCCACCCTATGGAGGCAAATCTTATTGTCACCTGCGGGAAGTCTCACATCAACTTTTGGACAGTGGAAGGAAGTACTCTCACTAAACGCCAAGGACTGTTTGAGAAACATGAAAAACCCAAGTATGTACTCTGCATTGCTTTTGCTGAGAATGGAGATGCAATTACAGGAGATTCAAGCGGGAACATCTACATCTGGGCTAAAGGTGGAAACCGGATCAGCAAGGTGGTTTCAGGAGCTCATGAGGGTGGCATCTTCTCTCTATGTGTGCTGAAGGATGGGACACTAGTTTCTGGAGGAGGGAAAGACCGCAAGGTTCTGCTGTGGGACCATGATTACCGCAAGAAGAGCGAGATGGAGGTTCCTGAGGCGTTTGGCCCTGTCCGCACTCTTGCTGAAGGAAAACAGGATGAATTGTTTGTAGGAACAACTAAAAATGCTGTTCTACGGGGATCTTTCTCTGGTTCTCTCACCCCTATTGTTCAGGGTCACACTGATGAGCTGTGGGGTTTAGATGTTCATCCCAGCACTGAGCAGTTTGTGACATGTGGTCAAGACAAGCAGGTCTGTCTGTGGGACACCTGCTCCCATCTGCCTCTGTGGACCAAGGCCATTGAGGACCCTGCACGTTCTGTTGGATTTCATCCCAGTGGCACAGTGGTTGCTGTGGGAACCATGACAGCAAAGTGGTTGGTGCTGGACACTGACACACGTGATCTCGTCTCTATGCATACAGATGGCAATGAAATCATCTCTGTTGTCAAATATTCTCCAGATGGGGCGTACCTGGCTGTAGGATCCCACGATAACTTTGTTTACATCTACTCTGTTACTGAAAATGGCAAGAAATACAGCCGTGTTGGCAAATGCACTGGACACTCCAGCTTTGTCACTCATCTCGACTGGTCCACCGACAGCCAGTTTATTGTAACCAACTCAGGCGACTATGAGATCTTATACTGGGAGGCATCCAGTGGGAAGCATATTACTAATAATGATATAGTACGTAATCTGGAGTGGGCCACCTCAACCTGTGTGCTGGGTTTCAGTGTGTTTGgAATCTGGCCAGACGGTGCTGATGGAACAGATATTAATGCTGTATGCAGGTCACATGACAAAAACCTCCTTGCCTCCGCTGATGATTTTGGCAAAGTGCACTTGTTTTCTAACCCCTGTTCTCAACCAAGGGCTCCCAGCCACATCTATGGTGGGCACAGCAGCCATGTGACCAATGTTGCCTTTCTGCATGACGACAGTCATCTTATTTCTACCGGTGGGAAGGACACCAGCATTCTTCAATGGGTGCTGGCTTAGTCTGATCTGAGCCCTCACTGTAAACTCCTGCCCACTAGAGGGCAGCACTGCTGTGCCTAATTCTCTGCTGTCTGTTTGCCTGTATTGTGTACTGTATCATTAGGTTTTCCATTACGTGCTGGTCCAGAGTCAGTTTTGCCTCTTGCCCGGGTGTAATTATGGGGATTGTCTGAGGGTTAGAGGCTGAGCTTGCAATCAGAGTTGAATGACCACTAGAAGGAGCTCTGGTGCAGGAGAAGAAGCATGTTGTCTACTGTTGACTATTTATGCCTATTTAAAGAGTTTTAGCTGCTATTTGTGTTGCCGAAGCCTATAGAAATACATAATGCTGTCACTTAGTGGaggctgtattttaatattaaaagtacATGATAATGTTGTGGCACTTAGCTTTTGATGCATATCTAGGGGTGAACTTAAGCTGTGCTTTGccttttatttgttaataaagtTTCTCATAATGAA

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0072686 mitotic spindle cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050706-71 Predicted to enable microtubule binding activity. Predicted to be involved in microtubule cytoskeleton organization. Predicted to colocalize with mitotic spindle. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; hatching gland; lens placode; and nervous system. Orthologous to human EML2 (EMAP like 2).

Ensembl:

ensembl_id ENSDART00000155154

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019186 lncRNA downstream 95545 28707287 ~ 28785593 (-) False XLOC_009298
TCONS_00019187 lncRNA downstream 95545 28714092 ~ 28785593 (-) False XLOC_009298
TCONS_00019188 lncRNA downstream 95545 28726897 ~ 28785593 (-) False XLOC_009298
TCONS_00019190 lncRNA downstream 108564 28758455 ~ 28772574 (-) False XLOC_009300
TCONS_00019189 lncRNA downstream 108564 28758455 ~ 28772574 (-) True XLOC_009300
TCONS_00019191 lncRNA upstream 100673 29005044 ~ 29009059 (-) True XLOC_009303
TCONS_00018295 lncRNA upstream 251691 29156062 ~ 29162253 (-) False XLOC_009306
TCONS_00018298 lncRNA upstream 417849 29322220 ~ 29322866 (-) True XLOC_009307
TCONS_00018303 lncRNA upstream 479344 29383715 ~ 29384612 (-) False XLOC_009309
TCONS_00019192 lncRNA upstream 632113 29536484 ~ 29539166 (-) True XLOC_009312
TCONS_00018284 mRNA downstream 20856 28822736 ~ 28860282 (-) True XLOC_009301
TCONS_00018281 mRNA downstream 78918 28787212 ~ 28802220 (-) False XLOC_009298
TCONS_00018280 mRNA downstream 78931 28787092 ~ 28802207 (-) False XLOC_009298
TCONS_00018289 mRNA upstream 106919 29011290 ~ 29012493 (-) True XLOC_009304
TCONS_00018291 mRNA upstream 188156 29092527 ~ 29114449 (-) False XLOC_009305
TCONS_00018290 mRNA upstream 188156 29092527 ~ 29114449 (-) False XLOC_009305
TCONS_00018292 mRNA upstream 188614 29092985 ~ 29109620 (-) False XLOC_009305
TCONS_00018293 mRNA upstream 188883 29093254 ~ 29114467 (-) True XLOC_009305
TCONS_00018276 other downstream 146097 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018264 other downstream 505511 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 958045 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 1226846 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 1234602 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018305 other upstream 480762 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 765821 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 972903 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 1940018 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018355 other upstream 2158186 31062557 ~ 31067406 (-) True XLOC_009336

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_05208841_05218652.mRNA True 1012 mRNA 0.48 10 CI01000072 5208841 ~ 5218652 (-)